Files in the Dataset have been checked for format consistency, and merged into a single, integrated, downloadable file.
Download Entire Dataset Submit Data For This Cruise How to Cite DatasetFiles listed here are the most recent version submitted by the cruise scientists, but have not yet been checked for consistency and merged into the main Dataset. They are provided "as is". If you are unsure of which files to use, stick to the Dataset files above.
These files are not yet in the Dataset.
| Filename (Download) | Size | Date Submitted |
| A_cruise_narrative_20131206.doc | 1.2 MB | 2013-12-05 |
| 40n_hy1.csv | 910.6 kB | 2018-05-12 |
| A_cruise_narrative_2012_40N_20180502.doc | 620.0 kB | 2018-05-12 |
| 49UP20120726_40N_nut_RM_measurement.csv | 14.8 kB | 2019-11-01 |
| 2012_C_hydrographic_merged_20191018.docx | 2.8 MB | 2019-11-01 |
| 40n_hy1_20191113.csv | 942.6 kB | 2020-10-15 |
| 49UP20120726_40N_nut_RM_measurement.csv | 15.0 kB | 2020-10-15 |
| 49UP20120726_C_hydrography_20201015.docx | 2.7 MB | 2020-10-15 |
| Table_of_contents_20201015.doc | 26.6 kB | 2020-10-15 |
| 49RY20120726.exc.csv | 868.1 kB | 2021-04-19 |
| epcRF1206_in-vivo.txt | 2.7 MB | 2013-12-05 |
| 40nsu.txt | 40.3 kB | 2018-05-12 |
CCHDO-1.0 CF netCDF files converted from bottle exchange file
CCHDO-1.0 CF netCDF files converted from ctd exchange file
I started with file 40n_hy1_20191113.csv from https://cchdo.ucsd.edu/cruise/49RY20120726 File had been Received 2020-10-15 minor reformat, no flag changes.
This new pdf version of the cruise report includes a new hydrography section and expanded data processing notes. The file: "p09_49RY20100706_do.pdf" was submitted in error earlier today. It is not related to this cruise.
Ship Name: Ryofu Maru (Japan Meteorological Agency) Section: 40N (RF19-05) Cruise date: 12 June 2019 - 3 August 2019
This cruise was conducted under the GO-SHIP program at P13 line
This cruise was conducted under the GO-SHIP program at P13N line
2012 49UP20120726 processing - CTD/merge - CTDPRS,CTDTMP,CTDSAL,CTDOXY
2018-11-01
CCHSIO
Submission
filename submitted by date id
-------------------- -------------- ---------- -----
20131206_40n_ct1.zip Toshiya NAKANO 2013-12-05 7538
ct1.zip Toshiya NAKANO 2018-05-12 14005
Changes
-------
20131206_40n_ct1.zip
- STNNBRs do not match bottle file STNNBRs.
- Merged to Data History without processing since newer version available
ct1.zip
- renamed ct1.csv files to exchange format
- added units comments
- added cruise information as commentes
- removed leg designation from the header EXPOCODE, and added the Leg dates as comments
- as of this merge, the CCHDO webpage for this cruise uses the incorrect EXPOCODE = 49RY20120726.
The correct EXPOCODE is 49RU20120726, and this is used in the CTD files.
Conversion
----------
file converted from software
----------------------- -------------------- -----------------------
49UP20120726_nc_ctd.zip 49UP20120726_ct1.zip hydro 0.8.2-48-g594e1cb
Updated Files Manifest
----------------------
file stamp
----------------------- --------------
49UP20120726_ct1.zip 20181101CCHSIO
49UP20120726_nc_ctd.zip 20181101CCHSIO
:Updated parameters: CTDPRS,CTDTMP,CTDSAL,CTDOXY
opened in JOA 5.2.1 with no apparent problems:
49UP20120726_ct1.zip
49UP20120726_nc_ctd.zip
opened in ODV with no apparent problems:
49UP20120726_ct1.zip
The text version of 40N_2012's cruise report is ready for the CCHDO dataset. It includes all PI-provided data reports, CCHDO summary page and CCHDO data processing notes.
Cruise Narrative and Bottle data were updated.
Cruise Narrative and Bottle data were updated.
Cruise Narrative and Bottle data were updated.
Cruise Narrative and Bottle data were updated.
I have confirmed this cruise is a contributor to the GO-SHIP colaboration via the cruise overview.
http://www.data.jma.go.jp/gmd/kaiyou/data/db/vessel_obs/data-report/data/2012/ship/RF1206/RF1206.SUM
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
SUM
==========================================
RF12-06 2012 49RY20120726 processing - SUM
==========================================
2014-09-08
G Ratnam
.. contents:: :depth: 2
Submission
==========
================== ============== ========== ========= ====
filename submitted by date data type id
================== ============== ========== ========= ====
20131206_40nsu.txt Toshiya NAKANO 2013-12-05 SUM 1114
================== ============== ========== ========= ====
Process
=======
Changes
-------
-Put SUM file online.
20131206_40nsu.txt
~~~~~~~~~~~~~~~~~~
.. _merge:
Merge
-----
20131206_40nsu.txt
~~~~~~~~~~~~~~~~~~
Directories
===========
:working directory:
/data/co2clivar/pacific/49RY20120726_RF1206/original/2014.09.08_SUM_GR
:cruise directory:
/data/co2clivar/pacific/49RY20120726_RF1206
Updated Files Manifest
======================
================== =====
file stamp
================== =====
49RY20120726su.txt
================== =====
BTL
=============================
49RY20120726 processing - BTL
=============================
2014-03-03
R Lee
.. contents:: :depth: 2
Submission
==========
==================== ============= ========== ========= ====
filename submitted by date data type id
==================== ============= ========== ========= ====
49RY20120726.exc.csv Robert M. Key 2014-02-06 BTL 1140
==================== ============= ========== ========= ====
Parameters
----------
49RY20120726.exc.csv
~~~~~~~~~~~~~~~~~~~~
CTDPRS
CTDTMP
CTDSAL [1]_
SALNTY [1]_
CTDOXY [1]_
OXYGEN [1]_
SILCAT [1]_
NITRAT [1]_
NITRIT [1]_
PHSPHT [1]_
TCARBN [1]_
ALKALI [1]_
PH_TOT [1]_
PH_TMP
CHLORA [1]_
PPHYTN [1]_
BTL_TIME [3]_
SBE35 [1]_ [3]_
.. [1] parameter has quality flag column
.. [2] parameter only has fill values/no reported measured data
.. [3] not in WOCE bottle file
Process
=======
Changes
-------
- NITRAT empty data value flag 2 changed to flag 9
- PHAEO changed to PPHYTN
49RY20120726.exc.csv
~~~~~~~~~~~~~~~~~~~~
Conversion
----------
======================= ==================== ========================
file converted from software
======================= ==================== ========================
49RY20120726_nc_hyd.zip 49RY20120726_hy1.csv hydro 0.8.0-100-g92744bf
======================= ==================== ========================
All converted files opened in JOA with no apparent problems.
Directories
===========
:working directory:
/data/co2clivar/pacific/49RY20120726_RF1206/original/2014.03.03_BTL_RJL
:cruise directory:
/data/co2clivar/pacific/49RY20120726_RF1206
Updated Files Manifest
======================
======================= =================
file stamp
======================= =================
49RY20120726_hy1.csv 20140303SIOCCHRJL
49RY20120726_nc_hyd.zip 20140303SIOCCHRJL
======================= =================
The following files are now available online under 'Files as received', unprocessed by the CCHDO.
49RY20120726.exc.csv
Bottle data file, updates by Bob Key: 1. Assigned bottle # 9999 to bucket samples 2. Set bottle flag for bucket samples to 2 3. Calculated nitrate via NO3+NO2 - nitrate 4. PHTS and flag value of 1 for good samples, changed to 2 5. Reset 1 ph flag to 4 (bad borttle) 6. Deleted non standard columns (flags fo theta, sigma) 7. added header
Expocode: 49RY20120726 Ship: Ryofu Maru Woce Line: 40N Note: Started with the file you posted earlier today: 1. Assigned bottle # 9999 to bucket samples 2. Set bottle flag for bucket samples to 2 3. Calculated nitrate via NO3+NO2 - nitrate 4. PHTS and flag value of 1 for good samples, changed to 2 5. Reset 1 ph flag to 4 (bad borttle) 6. Deleted non standard columns (flags fo theta, sigma) 7. added header This is a really nice data set!
I've placed a new PDF version of the cruise report: 49RY20120726do.pdf
into the directory: http://cchdo.ucsd.edu/data/co2clivar/pacific/49RY20120726_RF1206 .
It includes all the reports provided by the cruise PIs, summary pages and CCHDO data processing notes, as well as a linked Table of Contents and links to figures and tables.
Started with the file you posted earlier today:
1. Assigned bottle # 9999 to bucket samples
2. Set bottle flag for bucket samples to 2
3. Calculated nitrate via NO3+NO2 - nitrate
4. PHTS and flag value of 1 for good samples, changed to 2
5. Reset 1 ph flag to 4 (bad borttle)
6. Deleted non standard columns (flags fo theta, sigma)
7. added header
When you import this one you will find some bottle flags set to 0. For these the bottle number is set to "missing". These are bucket samples. Historically, we always set the bottle number for these (and surface soaks and similar) to 99, however this file already has bottle numbers of 99 and 999.
I recommend that the bucket samples be reset to have a bottle number of 9999 and a bottle flag of 2. This way they are still identified and existing software will function normally. Recall that a zero flag (0) is generally used to mean "a value that could have been measured but was somehow approximated". Zero flag also implies "good".
Regardless of procedure, a header note of some sort will be needed.
==============================
49RY20120726 processing - Maps
==============================
2014-02-05
R Lee
.. contents:: :depth: 2
Process
=======
Changes
-------
- Maps created from 20131206_40n_hy1.csv
Directories
===========
:working directory:
/data/co2clivar/pacific/49RY20120726_RF1206/original/2014.02.05_maps_RJL
:cruise directory:
/data/co2clivar/pacific/49RY20120726_RF1206
Updated Files Manifest
======================
==================== =====
file stamp
==================== =====
49RY20120726_trk.jpg
49RY20120726_trk.gif
==================== =====
The following files are now available online under 'Files as received', unprocessed by the CCHDO.
20131206_40n_ct1.zip
20131206_40nsu.txt
A_cruise_narrative_20131206.doc
epcRF1206_in-vivo.txt
20131206_40n_hy1.csv
=======================
49RY20120726 processing
=======================
2013-12-10
M Shen
.. contents:: :depth: 2
Process
=======
ExpoCode changed from 49UP20120726 to 49RY20120726. 49UP20120726 added as an alias for the cruise.
SUM file
Expocode: 49UP20120726 Ship: Ryofu Maru Woce Line: None Note: None
CTD files
Expocode: 49UP20120726 Ship: Ryofu Maru Woce Line: None Note: None
Cruise documentation
Expocode: 49UP20120726 Ship: Ryofu Maru Woce Line: None Note: None
FLU and CHL data file
Expocode: 49UP20120726 Ship: Ryofu Maru Woce Line: None Note: None