Files in the Dataset have been checked for format consistency, and merged into a single, integrated, downloadable file.
Download Entire Dataset Submit Data For This Cruise How to Cite DatasetCCHDO-1.0 CF netCDF files converted from bottle exchange file
CCHDO-1.0 CF netCDF files converted from ctd exchange file
49NZ200107_1 processing - BTL
2022-08-17
A Barna
Submissions
id submit date submitted by file name
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12599 49NZ200107_1_hy1.csv
Changes
* Added constructed CTDPRS of 4.5 for the "surface" nutrient samples as noted in the cruise report
* Change empty value alkalinity flags from 3 to 9
49NZ200107_1_hy1.csv and 49NZ200107_1_nc_hyd.zip opened in JOA with no apparent problems.
Conversions
note: converted and put online by E Aitoro
file converted from software
----------------------- -------------------- -----------------------
49NZ200107_1_nc_hyd.zip 49NZ200107_1_hy1.csv hydro 0.8.2-62-gb1f9390
49NZ200107_1hy.txt 49NZ200107_1_hy1.csv hydro 0.8.2-62-gb1f9390
Updated Files Manifest
file stamp
----------------------- -----------------
49NZ200107_1_hy1.csv 20220817CCHSIOAMB
49NZ200107_1_nc_hyd.zip 20220817CCHSIOAMB
49NZ200107_1hy.txt 20220817CCHSIOAMB
P17N 2001 49NZ200107_1 processing - BTL/merge - CTDOXY, OXYGEN, OXYGEN_FLAG_W, PH_TOT, C13ERR
2016-02-21
R Lee
Submission
filename submitted by date id
-------------------------------------------------------------------------------------
p17n_2001_hy1.csv Roxanne Lee for JAMSTEC 2017-02-07 12584
Merge
12584_p17n_2001_hy1.csv merged into 4116_p17n_2001a_hy1.csv using hydro 0.8.2-47-g3c55cd3.
:Updated parameters (with higher precision) from 12584_p17n_2001_hy1.csv: CTDOXY, OXYGEN, OXYGEN_FLAG_W, PH_TOT, C13ERR
49NZ200107_1_hy1.csv and 49NZ200107_1_nc_hyd.zip opened in JOA with no apparent problems.
note: CTDOXY flags (flag 1) follow the WOCE CTD Quality Codes defined in the Exchange Format: Flag 1 - Not Calibrated
(http://exchange-format.readthedocs.io/en/latest/quality.html#woce-ctd-quality-codes)
Conversion
----------
file converted from software
--------------------------------------------------------------------
49NZ200107_1_nc_hyd.zip 49NZ200107_1_hy1.csv hydro 0.8.2-47-g3c55cd3
Updated Files Manifest
----------------------
file stamp
-----------------------------------------
49NZ200107_1_hy1.csv 20170221CCHSIORJL
49NZ200107_1_nc_hyd.zip 20170221CCHSIORJL
JAMSTEC bottle file from their website: http://www.jamstec.go.jp/iorgc/ocorp/data/p17nrev_2001/P17N/index.html
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
File merged with PH headers submitted by Alex Kozyr on 2009-04-24
with merge_exchange_bot.rb and copy_bottle_data.rb (J.Fields)
submission file 20090424_10_53_Alexander_Kozyr/p17n_2001a_hy1.csv
parameters merged: PH_TEMP, PH_TOT, PH_FLAG_W
units on PH_TMP changed from ITS-90 to DEG C
existing PH column removed
DEPTH units changed from '' to METERS
THETA units changed from '' to DEG C
C13ERR units changed from '' to /MILLE
C14ERR units changed from '' to /MILLE
File opened in JOA, no errors found
NOTE: WOCE and NetCDF files do not have updated PH headers
working directory: original/2010.08.24_P17N_2001_PH_header_CBG/
Name: Alexander Kozyr
Institute: CDIAC/ORNL
Country: USA
Expo: 49NZ20010725 (49NZ200107-1) Line: P17N_2001
Date: 2001-07-25
Action: Place Online
Notes: Here is final Japanese corrected file from P17N_2001 section. I changed the PH column to PH_TOT and added the new PH_TMP column, chenged EXPOCODE to 49NZ20010725.
P17N:
I did not receive the carbon-related data from Japan for this cruise. I copied the data files from CCHDO and intend to do QA-QC on these numbers. If I find anything wrong I will contact carbon PI and CCHDO.
The attached .doc file is the table for CLIVAR Repeat Section data status summary. As you can see from the table, we have opened the data from A22_2003, A16N_2003, and P17N_2001 for public through CDIAC CLIVAR web page:
http://cdiac.ornl.gov/oceans/RepeatSections/repeat_map.html
and these data are also available through Ocean Data Mercury:
http://mercury.ornl.gov/ocean/
I did not receive the carbon-related data from Japan for this cruise. I copied the data files from CCHDO and intend to do QA-QC on these numbers. If I find anything wrong I will contact carbon PI and CCHDO.
07/01/04 Kappa DOC Cruise report changes:
Added ?13C" to Y. Kumamoto's (PI) responsibilities
Moved Surface Nutrients report from section 2.6 to section 2.3.
Updated top 2 plots of Figure 13.
Updated section 3.7 an Carbon Isotope Ratios:
Changed section on Sample Collection
Updated Table 1
Changed section called "Equipment and technique for sample
preparation" to "Sample preparation" and deleted last
sentence
Added sections on delta ?13C and DELTA ?14C
Replaced scatter plots of delta ?13C and DELTA ?14C preliminary
Scatter plots with delta ?13C and DELTA ?14C against depth
Vertical sections.
Added Table 2: Summary of replicate analyses
Added new section: "Quality control samples"
Added Table 3: Summary of quality control samples (QCS)
Added section on quality control flag assignment
Added Data Summary
Expanded References
Updated most figures for greater clarity
Expanded these Data Processing Notes
Added ?13C" to Y. Kumamoto's (PI) responsibilities
Moved Surface Nutrients report from section 2.6 to section 2.3.
Updated top 2 plots of Figure 13.
Updated section 3.7 an Carbon Isotope Ratios:
Changed section on Sample Collection
Updated Table 1
Changed section called "Equipment and technique for sample
preparation" to "Sample preparation" and deleted last
sentence
Added sections on delta ?13C and DELTA ?14C
Replaced scatter plots of delta ?13C and DELTA ?14C preliminary
Scatter plots with delta ?13C and DELTA ?14C against depth
Vertical sections.
Added Table 2: Summary of replicate analyses
Added new section: "Quality control samples"
Added Table 3: Summary of quality control samples (QCS)
Added section on quality control flag assignment
Added Data Summary
Expanded References
Updated most figures for greater clarity
Expanded these Data Processing Notes
New files for p17n_2001a were ftp'd from Lynne Talley. Files
were updates of previously submitted files also obtained from
Lynne Talley. Complete replacement of all files was sent.
Only edits made to files were of expocode numbers. All files had expocodes changed from : 49MR01K04/1 to 49NZ200107_1
All file names were edited to comply with new CCHDO file naming convention.
Problems were encountered when attempting to convert the submitted .csv files into exchange. Therefore, exchange files were recreated using woce files and in-house software. Exchange files sent by data originator were retained, however were not placed online.
I sent a question to Masao Fukasawa about the flags in the 2001 SAGE P01 CTD files, he answered back that there is a newer version of the data.
He has had Hiroshi Uchida ftp over the new p17n data set.
I'm putting the data set in my ftp site
EXPOCODE: 49NZ200107_1
Dates: July 25 - Aug 27, 2001
Ship/Country: MIRAI/JAPAN
Chief Scientist: Fukasawa
Sum: 82 Rossette stations
Bot: contains following parameters: CTDPRS CTDTMP CTDSAL CTDOXY
THETA SIG0 SALNTY OXYGEN NITRAT NITRIT SILCAT PHSPHT CFC-11
CFC-12 CFC113 PH ALKALI TCARBN DELC13 C13ERR DELC14 C14ERR
CTD: zip file contains 76 station files.
Reformatting notes:
2004.05.21 DBK
Reformatting sum, bottle and CTD files:
SUM: in order to convert bottle file to exchange and netcdf, the sumfile needed WHP-ID field entirely filled. Therefore, empty spaces in this column were filled with UNK. This was saved as the final sumfile and replaced the previously reformatted (by SA) version. Sumfile has two station 67, cast 1 entries however one entry is associated with P17N and the other is not on any woce line and was labeled as UNK. This caused no problem in format checks or conversions.
Expocode was changed to
BOT: Original bottle file was .csv format, however not in exchange format. itwas an excel file with Q1 word comma separated at the end of each line. File was converted to woce format and Q1 words constructed from individual bytes. First woce header line was added including name/date stamp.
File passed wocecvt with no errors. File converted to exchange and netcdf with no apparent errors.
CTD: Edited expocode to conform with SUM file. Files passed wctcvt with no errors. Files were converted to exchange and netcdf with no apparent errors.
DOC: documentation files were copied from the NEWDOCS directory and placed online. Old word documentation file was moved to original directory.
All web pages and station track files were generated and placed online, however this cruise will not link until hand linked into appropriate tables.
That is very strange. I unzipped the ctd file on my machine and sta 92 is complete and 93-99 and X01 are not empty.
I unzipped the original file that I read from the cd and then I ftp'd the file in the p17n north directory and unzipped it. They both had all the stations, no empty files.
Let me know if you want me to copy them to whpo.
Lynne- I took a look at the P17N data files that Sarilee moved over. She did some reformatting on the sumfile and I took a look at the ctd and bottle files. The bottle file, although in xcel, looks okay and I'll convert it to woce and then to exchange, etc. but the CTD files have some issues some of which relate to the sumfile:
in the sumfile there are two station 67 cst 1 entries, one 08/15/01 and one 08/18/01. There is only one CTD station file matching 08/18/01.
station file 92, cst 1 had only 2507 lines but the no. of records was 3804... was the file truncated.
finally, stations 93, 94, 96, 98, 99 and X01 are all empty files.
I was wondering if you are in correspondence with the data originators and could ask about these issues, otherwise I'll try to track them down and tackle them.
I have put the p17n from the cd Lynne gave me in the p17n directory on the new co2clivar website area. The files are sort of in WOCE format.
WHPO (and Lynne), I was going to start putting up the submitted P17N reoccupations that are sitting in our incoming directory. However, the associated README states the data are in file format "lha", which is a DOS based compression similar to zip or winzip. I'm pretty unfamiliar with it or how to use it/where to get it but have read that it's uncompatible with zip or winzip, so one has to be in DOS to use the utility.
I can move the files over, however they are illegible at this point. Can anyone help out? Anyone familiar with lha archival format? Otherwise I'll be writing Fukasawa back for assistance on reformatting.
Danie, Lynne gave me a cd yesterday so I could extract the p01 information from it. It also has some p17n data, but I haven't looked at it to see in what format it is. I'll check and let you know, hopefully this week.
The cd is from Fukasawa and has p01c, p01e, p01h, p01w, and p17n.
The data disposition is:
Public
The bottle file has the following parameters:
CTDPRS, CTDTMP, CTDSAL, CTDOXY, SALNTY, OXYGEN, NITRAT, NITRIT, SILCAT, PHSPHT, CFC-11, CFC-12, CFC113, PH, ALKALI, TCARBN, DELC13, C13ERR, DELC14, C14ERR
The file format is:
WOCE Format (ASCII)
The archive type is:
Other: lha
The data type(s) is:
Summary (navigation)
Bottle Data (hyd)
CTD File(s)
Documentation
The file contains these water sample identifiers:
Cast Number (CASTNO)
Station Number (STATNO)
Bottle Number (BTLNBR)
Sample Number (SAMPNO)
FUKASAWA, MASAO would like the following action(s) taken on the data:
Place Data Online