Files in the Dataset have been checked for format consistency, and merged into a single, integrated, downloadable file.
Download Entire Dataset Submit Data For This Cruise How to Cite DatasetFiles listed here may be useful and are provided 'as is'. Files might include raw data, intermediate processing, or other data collected on a cruise that is outside the current scope of CCHDO.
| Role | Data Type | Format | Filename (Download) |
|---|---|---|---|
| ancillary | bottle | 33RR20080204_blackcarbon_data.xlsx (42.2 kB) |
Files listed here are the most recent version submitted by the cruise scientists, but have not yet been checked for consistency and merged into the main Dataset. They are provided "as is". If you are unsure of which files to use, stick to the Dataset files above.
These files are not yet in the Dataset.
| Filename (Download) | Size | Date Submitted |
| I06S_dissolvedFeandAl.txt | 13.0 kB | 2015-06-08 |
| i06s-tm.zip | 126.1 kB | 2020-10-14 |
CCHDO generated sum file replaced with user submitted sum file
CCHDO generated sum file replaced with user submitted sum file
CCHDO-1.0 CF netCDF files converted from bottle exchange file
33RR20080204 processing - BTL
2022-07-06
A Barna
Submissions
id submit date submitted by file name
----- ------------- -------------- --------------------
27013 33RR20080204_hy1.csv
Changes
* Changed units of DELSI30 from nothing to /MILLE (confirmed expected units from literature)
33RR20080204_hy1.csv and 33RR20080204_nc_hyd.zip opened in JOA with no apparent problems.
Conversions
note: converted and put online by C Berys
file converted from software
----------------------- -------------------- -----------------------
33RR20080204_nc_hyd.zip 33RR20080204_hy1.csv hydro 0.8.2-61-g3353cfe
33RR20080204hy.txt 33RR20080204_hy1.csv hydro 0.8.2-61-g3353cfe
Updated Files Manifest
file stamp
----------------------- -----------------
33RR20080204_hy1.csv 20220706CCHSIOAMB
33RR20080204_nc_hyd.zip 20220706CCHSIOAMB
33RR20080204hy.txt 20220706CCHSIOAMB
I06 2008 33RR20080204 processing - BTL/merge - CCL4
2022-05-25
Carolina Berys
Submissions
id date submit by file name
----- ---------- ------------------------ -------------------------------
27010 2022-05-24 Carolina for Jim Happell CFC Station 1-106 with CCl4.txt
26991 2022-04-29 Carolina for Jim Happell CFC Station 1-106 with CCl4.txt
Changes
Name Changes
* none
Unit Changes
* none
Other Changes
* Left padded BTL_TIME with zeros
* CCL4 submission changes:
* empty values changed to the fill value (-999)
* values changed to the fill value (-999) for flag 5
Merges
* CFC Station 1-106 with CCl4.txt (27010) merged into 33RR20080204_hy1.csv (26985) using hydro 0.8.2-61-g3353cfe
- Merged parameters: CCL4 CCL4_FLAG_W
opened in JOA with no apparent problems:
33RR20080204_hy1.csv
33RR20080204_nc_hyd.zip
Conversions
file converted from software
----------------------- -------------------- -----------------------
33RR20080204hy.txt 33RR20080204_hy1.csv hydro 0.8.2-61-g3353cfe
33RR20080204_nc_hyd.zip 33RR20080204_hy1.csv hydro 0.8.2-61-g3353cfe
Updated Files Manifest
file stamp
----------------------- -----------------
33RR20080204_hy1.csv 20220525CCHSIOCBG
33RR20080204_nc_hyd.zip 20220525CCHSIOCBG
33RR20080204hy.txt
Duplicates averaged and flagged 6
Columns are as follows: Station, cast x 100 + niskin #, pressure, CFC-12 concentration, CFC-12 quality bite, CFC-11 concentration, CFC-11 Quality byte, CFC113 Concentration, CFC-113 Quality byte, CCl4 concentration, CFC Quality byte, comments.
All data values passed the highest level of quality control (flag 2). For the empty data locations, no DOC data are available, i.e. the respective ratios could not be calculated. Dissolved black carbon (nM C), this corresponds to BLACKC in the cruise planning correspondence. 14-BC has not been done. Dissolved black carbon (% of DOC) is the ratio of dissolved black carbon and bulk DOC concentrations. B3CA-1,2,3 etc. are molecular constituents of dissolved black carbon (e.g. B3CA-1,2,3 is “1,2,3 benzenetricarboxylic acid”). Dissolved black carbon is calculated from the concentrations of these constituents.
I06 2008 33RR20080204 processing - BTL - CFC flag edits, DATE and TIME from SUM file
2022-04-26
C Berys
Changes
* CFC-11, CFC-12, and CFC113 flag from 2 to 4 at (sta 2, ca 1, btl 4)
* changed DATE and TIME from bottle date and bottle time to cast date and cast time from BO event in SUM file
Conversions
file converted from software
----------------------- -------------------- -----------------------
33RR20080204_nc_hyd.zip 33RR20080204_hy1.csv hydro 0.8.2-61-g3353cfe
33RR20080204hy.txt 33RR20080204_hy1.csv hydro 0.8.2-61-g3353cfe
Updated Files Manifest
file stamp
----------------------- -----------------
33RR20080204_hy1.csv 20220426CCHSIOCBG
33RR20080204_nc_hyd.zip 20220426CCHSIOCBG
33RR20080204hy.txt
Found these missing/preliminary trace metal rosette data in the ODF archive.
I06S 2008 33RR20080204 processing - CTD merge CTDBEAMCP into existing Exchange file
2017-12-01
CCHDO
Submission
filename submitted by date id
------------------ ------------ ---------- -----
2008I06S.TXT Wilf Gardner 2017-06-01 12759
Changes
-------
i06s_33RR20080204ct.zip
- moved woce file to Data History since it no longer matches the Exchange file.
2008I06S.TXT
- As per W.Gardner and A.Mishonov, changed station 91 from cast 1 to 17.
i06s_33RR20080204_ct1.zip
- Files 07102_ct1.csv and 08181_ct1.csv do not have complete data columns. -999,9 were added
for those depth/parameter pairs that are missing.
- Station 08401_ct1.csv did not have CTDBEAMCP data to merge: fill values were used.
- changed file names, including zip file, to conform to Exchange specifications
- merged CTDBEAMCP data from Wilf Gardner
- removed TRANSM,TRANSM_FLAG_w: no longer needed since CTDBEAMCP is available
- changed CTDETIME units from blank to SECONDS
- added header and unit comments
- added cruise comments
- FLUORM and SPAR are parameters in the data files that are not defined by CCHDO.
Conversion
----------
file converted from software
----------------------- -------------------- -----------------
33RR20080204_nc_ctd.zip 33RR20080204_ct1.zip 0.8.2-48-g594e1cb
Updated Files Manifest
----------------------
file stamp
--------------------- ----------------
33RR20080204_ct1.zip 20171201CCHSIO
33RR20080204_nc_ctd.zip 20171201CCHSIO
:Removed parameters: TRANSM
:Merged parameters: CTDBEAMCP, CTDBEAMCP_FLAG_W
opened in JOA with no apparent problems:
33RR20080204_ct1.zip
33RR20080204_nc_ctd.zip
opened in ODV with no apparent problems:
33RR20080204_ct1.zip
Wilf Gardner's CTDBEAMCP final data to be merged
I06 2008 33RR20080204 processing - BTL/merge - Tritium, DELO18 remerged
2016-05-24
C Berys
Submission
filename submitted by date id
-----------------------------------------------------------------
I6S_2008_Tritium_Submission.xlsx Bill Jenkins 2016-02-02 12081
33RR20080204.exc.csv Bob Key 2016-02-02 12082
33RR20080204_o18.csv Peter Brown 2015-06-03 11859
Changes
- TRITUM and DELO18 remerged
Merge
I6S_2008_Tritium_Submission.xlsx merged into 33RR20080204_hy1.csv using hydro 0.8.2-47-g3c55cd3.
:Updated parameters: TRITUM, TRITER, TRITUM_FLAG_W
33RR20080204_o18.csv merged into 33RR20080204_hy1.csv using hydro 0.8.2-47-g3c55cd3.
:Updated parameters: DELO18, DELO18_FLAG_W,
33RR20080204_hy1.csv opened in JOA with no apparent problems.
Conversion
----------
file converted from software
--------------------------------------------------------------------
33RR20080204_nc_hyd.zip 33RR20080204_hy1.zip hydro 0.8.2-47-g3c55cd3
33RR20080204hy.txt 33RR20080204_hy1.csv hydro 0.8.2-47-g3c55cd3
Updated Files Manifest
----------------------
file stamp
-----------------------------------------
33RR20080204_hy1.csv 20160524CCHSIOCBG
33RR20080204_nc_hyd.zip 20160524CCHSIOCBG
33RR20080204hy.txt
DOC data missing from previous versions, needs to be re-added
I06 2008 33RR20080204 processing - BTL/merge - Tritium, DELO18
2016-02-20
C Berys
Submission
filename submitted by date id
-----------------------------------------------------------------
I6S_2008_Tritium_Submission.xlsx Bill Jenkins 2016-02-02 12080
33RR20080204.exc.csv Bob Key 2016-02-02 12082
33RR20080204_o18.csv Peter Brown 2015-06-03 11859
Changes
- changed flag to 9 for fill value at 21-3-1-1 and 22-1-3-3 for ALKALI
Merge
I6S_2008_Tritium_Submission.xlsx and 33RR20080204_o18.csv merged into 33RR20080204.exc.csv by Bob Key, renamed to 33RR20080204_hy1.csv.
:Updated parameters: TRITIUM, TRITER, TRITIUM_FLAG_W, DELO18
33RR20080204_hy1.csv opened in JOA with no apparent problems.
note: unresolved flags for SALNTY, CFC-11, CFC-12, CFC113
Conversion
----------
file converted from software
--------------------------------------------------------------------
33RR20080204_nc_hyd.zip 33RR20080204_hy1.zip hydro 0.8.2-47-g3c55cd3
33RR20080204hy.txt 33RR20080204_hy1.csv hydro 0.8.2-47-g3c55cd3
Updated Files Manifest
----------------------
file stamp
-----------------------------------------
33RR20080204_hy1.csv 20160220CCHSIOCBG
33RR20080204_nc_hyd.zip 20160220CCHSIOCBG
33RR20080204hy.txt
This file includes the H3 values with the correction for the cap contamination. The influence of the correction is reflected in the larger than normal error
Tritium Data Corrected for contamination problems, supersedes all previous tritium data for this cruise
33RR20080204.exc.csv available as received, submitted 2016-01-06 by Robert M. Key
notes: File contains revised H3 data that Jenkins submitted in early December 2015.
WHOI I6S_2008 ReSubmission.xlsx available as received, submitted 2015-11-30 by William Jenkins
Submission note: This is a resubmission of tritium data from the WHOI lab. The previously submitted data are in error due to a software bug.
These are the dissolved (<0.45 um) Fe and Al data for the 2008 I06 cruise. The quality flags (WOCE) are as follows: 2: acceptable; 3: questionable; 4:bad; 9: sample not drawn. Dissolved Fe was analyzed using the ICPMS method of Milne et al. (2010). Dissolved Al was analyzed via shipboard Flow Injection Analysis (Resing and Measures, 1994). The detection limits were 0.02 nM/L for Fe and 0.20 nM/L for Al. For more information about this dataset, please contact Chris Measures (measures@hawaii.edu) or Maxime Grand (maxime@hawaii.edu). System Message: Submitter requests file be attached to cruise 232
Delta 18 O oxygen isotope data for 2008 occupation of I06S (33RR20080204) System Message: Submitter requests file be attached to cruise 232
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
There is not enough information to know where this file should go in the timeline.
TRITUM
======================================================
I06S 2008 33RR20080204 processing - BTL/merge - TRITUM
======================================================
2014-08-21
C Berys
.. contents:: :depth: 2
Submission
==========
================= =============================== ========== ========= ====
filename submitted by date data type id
================= =============================== ========== ========= ====
I6S Tritiums.xlsx Carolina Berys for Bill Jenkins 2014-01-17 TRITUM 1122
================= =============================== ========== ========= ====
Parameters
----------
I6S Tritiums.xlsx
~~~~~~~~~~~~~~~~~
- CTDPRS
- TRITUM [1]_ [4]_
- TRITER [4]_
.. [1] parameter has quality flag column
.. [2] parameter only has fill values/no reported measured data
.. [3] not in WOCE bottle file
.. [4] merged, see merge_
Process
=======
Changes
-------
I6S Tritiums.xlsx
~~~~~~~~~~~~~~~~~
- station 100, cast 1, bottle 18 duplicate line removed, 0.017 discarded (per J Swift)
.. _merge:
Merge
-----
I6S Tritiums.xlsx
~~~~~~~~~~~~~~~~~
Merged "I6S Tritiums.xlsx" into 33RR20080204_hy1.csv using hydro 0.8.2-36-ga56c156.
:New parameters: TRITUM, TRITER, TRITUM_FLAG_W
All comment lines from original file copied back in following merge. 33RR20080204_hy1.csv opened in JOA with no apparent problems.
Conversion
----------
======================= ==================== =======================
file converted from software
======================= ==================== =======================
33RR20080204_nc_hyd.zip 33RR20080204_hy1.zip hydro 0.8.2-36-ga56c156
33RR20080204hy.txt 33RR20080204_hy1.csv hydro 0.8.2-36-ga56c156
======================= ==================== =======================
All converted files opened in JOA with no apparent problems.
Directories
===========
:working directory:
/data/co2clivar/indian/i06/i06s_33RR20080204/original/2014.08.21_TRITUM_CBG
:cruise directory:
/data/co2clivar/indian/i06/i06s_33RR20080204
Updated Files Manifest
======================
======================= =================
file stamp
======================= =================
33RR20080204_hy1.csv 20140821SIOCCHCBG
33RR20080204hy.txt
33RR20080204_nc_hyd.zip 20140821SIOCCHCBG
======================= =================
HE/NEON
=============================================================================================
I06S 2008 33RR20080204 processing - BTL/merge - DELHE3, DELHER, HELIUM, HELIER, NEON, NEONER
=============================================================================================
2014.02.05
SE
.. contents:: :depth: 2
Submission
==========
=============================== ================== ========== ========== ====
filename submitted by date data type id
=============================== ================== ========== ========== ====
I6S Data.xlsx Jenkins, William J 2013-10-08 BTL 1078
=============================== ================== ========== ========== ====
Parameters
----------
I6S Data.xlsx
~~~~~~~~~~~~~
- CTDPRS
- DELHE3 [1]_ [4]_
- DELHER [4]_
- HELIUM [4]_
- HELIER [1]_ [4]_
- NEON [1]_ [4]_
- NEONER [4]_
.. [1] parameter has quality flag column
.. [2] parameter only has fill values/no reported measured data
.. [3] not in WOCE bottle file
.. [4] merged parameter, see notes below
Process
=======
Changes
-------
I6S Data.xlsx
~~~~~~~~~~~~~
- DELHE3, DELHER changed units from % to PERCNT
33RR20080204_hy1.csv
~~~~~~~~~~~~~~~~~~~~~~~~~
- added citation for Neon, PI Bill Jenkins.
Merge
-----
I6S Data.xlsx
~~~~~~~~~~~~~
: Updated parameters: merged DELHE3, DELHE3_FLAG_W, HELIUM, HELIUM_FLAG_W into existing, null columns.
: Merged parameters: merged NEON, NEONER, NEON_FLAG_W, DELHER, HELIER into new columns.
All comment lines from original file copied back in following merge.
Conversion
----------
======================= ==================== =======================
file converted from software
======================= ==================== =======================
33RR20080204hy.txt 33RR20080204_hy1.csv hydro 0.8.0-96-g8497d06
33RR20080204_nc_hyd.zip 33RR20080204_hy1.csv hydro 0.8.0-96-g8497d06
======================= ==================== =======================
All converted files opened in JOA with no apparent problems.
Directories
===========
:working directory:
/data/co2clivar/indian/i06/i06s_33RR20080204/original/2014.02.05_HELIUM-NEON_CBG
:cruise directory:
/data/co2clivar/indian/i06/i06s_33RR20080204
Updated Files Manifest
======================
======================= ================
file stamp
======================= ================
33RR20080204hy.txt
33RR20080204_hy1.csv 20140205SIOCCHSE
33RR20080204_nc_hyd.zip 20140205SIOCCHSE
======================= ================
In the file "I6S Tritiums.xlsx" just uploaded to CCHDO, please take a look at lines 290 & 291. There appears to be a duplicate entry for station 100 bottle 18, but could be some sort of typo. Let me know what correction to make and I'll take care of it with CCHDO
Tritium
Expocode: 33RR20080204 Ship: Roger Revelle Woce Line: I06S Note: Re-submitted to Susan Piercy via email on 2014-01-17
The following files are now available online under 'Files as received', unprocessed by the CCHDO.
I6S Tritiums.xlsx
=============================
33RR20080204 processing - BTL
=============================
2014-01-11
R Lee
.. contents:: :depth: 2
Process
=======
Changes
-------
- Added citation instructions for data use
Conversion
----------
============================ ========================= =======================
file converted from software
============================ ========================= =======================
i06s_33RR20080204_nc_hyd.zip i06s_33RR20080204_hy1.csv hydro 0.8.0-81-gc0a14ea
============================ ========================= =======================
All converted files opened in JOA with no apparent problems.
Directories
===========
:working directory:
/data/co2clivar/indian/i06/i06s_33RR20080204/original/2014.01.12_Citation_RJL
:cruise directory:
/data/co2clivar/indian/i06/i06s_33RR20080204
Updated Files Manifest
======================
- i06s_33RR20080204_nc_hyd.zip
- i06s_33RR20080204_hy1.csv
The following files are now available online under 'Files as received', unprocessed by the CCHDO.
I6S Data.xlsx
==========================================================
33RR20080204 processing - CFC-11, CFC-12, and CFC113 flags
==========================================================
2013-12-03
C Berys
.. contents:: :depth: 2
Process
=======
Changes
-------
* CFC-11, CFC-12, and CFC113 flag from 5 to 2 at:
- station 2, cast 1, bottle 4
- station 3, cast 2, bottle 1
Conversion
----------
============================ ========================= =======================
file converted from software
============================ ========================= =======================
i06s_33RR20080204_nc_hyd.zip i06s_33RR20080204_hy1.csv hydro 0.8.0-68-gcae40dc
i06s_33RR20080204hy.txt i06s_33RR20080204_hy1.csv hydro 0.8.0-68-gcae40dc
============================ ========================= =======================
All converted files opened in JOA with no apparent problems.
Directories
===========
:working directory:
/data/co2clivar/indian/i06/i06s_33RR20080204/original/2013.12.03_CFC-flag_CBG
:cruise directory:
/data/co2clivar/indian/i06/i06s_33RR20080204
Updated Files Manifest
======================
- i06s_33RR20080204_nc_hyd.zip
- i06s_33RR20080204_hy1.csv
- i06s_33RR20080204hy.txt
Helium and Neon
Expocode: 33RR20080204 Ship: Roger Revelle Woce Line: I6S Note: None
C14 and C13 with flags
====================================================
33RR20080204 processing - BTL/merge - DELC13, DELC14
====================================================
2013-09-18
C Berys
.. contents:: :depth: 2
Submission
==========
==================== ============================== ========== ====================== ===
filename submitted by date data type id
==================== ============================== ========== ====================== ===
33RR20080204.exc.csv Matthew Shen for Robert M. Key 2012-12-06 C14 and C13 with flags 930
==================== ============================== ========== ====================== ===
Parameters
----------
33RR20080204.exc.csv
~~~~~~~~~~~~~~~~~~~~
- CTDPRS
- CTDTMP
- CTDSAL [1]_
- SALNTY [1]_
- CTDOXY [1]_
- OXYGEN [1]_
- SILCAT [1]_
- NITRAT [1]_
- NITRIT [1]_
- PHSPHT [1]_
- CFC-11 [1]_
- CFC-12 [1]_
- CFC113 [1]_
- TCARBN [1]_
- ALKALI [1]_
- PH_SWS [1]_
- PH_TMP
- CDOM380 [1]_
- CDOM325 [1]_
- CDOMSL [1]_
- CDOM340 [1]_
- CDOM443 [1]_
- CDOMSN [1]_
- C14ERR
- THETA
- DELC14 [1]_ [4]_
- DELC13 [1]_ [4]_
- CDOM490 [1]_
- CDOM412 [1]_
- CDOM555 [1]_
.. [1] parameter has quality flag column
.. [2] parameter only has fill values/no reported measured data
.. [3] not in WOCE bottle file
.. [4] merged, see merge_
Process
=======
Changes
-------
i06s_33RR20080204_hy1.csv
~~~~~~~~~~~~~~~~~~~~~~~~~
- updated citation information, not preliminary
- NOTE: sent email to PI about CFC flags at station 2, cast 1, bottle 4 and station 3, cast 2, bottle 1
.. _merge:
Merge
-----
33RR20080204.exc.csv
~~~~~~~~~~~~~~~~~~~~
Merged 33RR20080204.exc.csv into i06s_33RR20080204_hy1.csv using hydro 0.8.0-42-g1695df5.
:New parameters: DELC14, DELC14_FLAG_W, C14ERR, DELC13, DELC13_FLAG_W
All comment lines from original file copied back in following merge. i06s_33RR20080204_hy1.csv opened in JOA with no apparent problems.
Conversion
----------
======================= ==================== =======================
file converted from software
======================= ==================== =======================
33RR20080204_nc_hyd.zip 33RR20080204_hy1.csv hydro 0.8.0-42-g1695df5
33RR20080204hy.txt 33RR20080204_hy1.csv hydro 0.8.0-42-g1695df5
======================= ==================== =======================
All converted files opened in JOA with no apparent problems.
Directories
===========
:working directory:
/data/co2clivar/indian/i06/i06s_33RR20080204/original/2013.09.18_C14-13_CBG
:cruise directory:
/data/co2clivar/indian/i06/i06s_33RR20080204
Updated Files Manifest
======================
- i06s_33RR20080204_nc_hyd.zip
- i06s_33RR20080204_hy1.csv
- i06s_33RR20080204hy.txt
Final C14 and C13 data (with errors and flags). Flags and values vetted between PU and NOSAMS
Expocode: 33RR20080204 Ship: None Woce Line: None Note: this file contains the final C14 and C13 data (with errors and flags) for this cruise (33RR20080204). As usual, the data can be made public immediately. Flags and values vetted between PU and NOSAMS.
The following files are now available online under 'Files as received', unprocessed by the CCHDO.
33RR20080204.exc.csv
This file contains the final C14 and C13 data (with errors and flags) for this cruise (33RR20080204). As usual, the data can be made public immediately. Flags and values vetted between PU and NOSAMS.
Ref: email from K. Sanborn and J. Swift (2011.08.23)
File i06s_33RR20080204_hy1.csv datestamp: 20091030CCHDOSIOJCF
original moved to: original/i06s_33RR20080204_rplcd_20100913_hy1.csv
Citations added by A. Barna
Formatted using copy_exchange_bot.rb (J. Fields)
working directory: original/2010.09.13_I06S_citation_CBG
DOC
TALK, TCO2
I've merged the DOC data that Alex Kozyr sent on 2009-11-23. The DOC data was reported with 4 decimal places, this was rounded to two decimal places. These data merged smoothly with no problems, and checked out in the bottle compare tool. Conversion to
woce and netCDF format also went smoothly.
The DOC data submitted by Craig Carlson (UCSB) to CDIAC on Sep. 29, 2009.
Expocode: 33RR20080204 Ship: R/V Roger Revelle Woce Line: I06S_2008 Note: The DOC data submitted by Craig Carlson (UCSB) to CDIAC on Sep. 29, 2009.
Merge Data, Place Online.
The DOC data submitted by Craig Carlson (UCSB) to CDIAC on Sep. 29, 2009.
I've merged the ALKALI and TCARBN data that Alex Kozyr
sent on 2009-11-05. This data merged smoothly with no
problems, and checked out in the bottle compare tool.
The final TCARB (R. Wanninkhof) and ALKALI (A. Dickson) submitted by Alex Kozyr
Expocode: 33RR20080204 Ship: R/V Roger Revelle Woce Line: I06S_2008 Note: The final TCARB (R. Wanninkhof) and ALKALI (A. Dickson) are attached. Please, let me know when the data vill be mesged into master file at CCHDO.
Merge Data, Place Online, Updated Parameters
Notes: The final TCARB (R. Wanninkhof) and ALKALI (A. Dickson) are attached. Please, let me know when the data vill be mesged into master file at CCHDO.
CDOM
CFCs
20090707
I'm reapplying the CFC data submitted by Debra Willey
and the cdom data submitted by Norm Nelson
to the most recent ODF files, submitted on 20090506.
In the exchange bottle file I changed O18O16 to DELO18.
From Debra Willey's submitted data I merged:
CFC-11,CFC-11_FLAG_W
CFC-12,CFC-12_FLAG_W
CFC113,CFC113_FLAG_W
From Norm Nelson's data I merged:
CDOM325, CDOM325_FLAG_W
CDOM340, CDOM340_FLAG_W
CDOM380, CDOM380_FLAG_W
CDOM412, CDOM412_FLAG_W
CDOM443, CDOM_443_FLAG_W (this flag has an inconsistant name)
CDOM490, CDOM490_FLAG_W
CDOM555, CDOM555_FLAG_W
CDOMSL, CDOMSL_FLAG_W
CDOMSN, CDOMSN_FLAG_W
I removed the empty CDOM column.
------------------------------------------------------------------------
20090415
I noticed that the bottle files for I06s have
CFC-113 instead of CFC113. I changed CFC-113 to CFC113.
I06S_2008_CFCs.csv from Debra Willey
In this file data from station 64 was listed form cast 1.
According to the sum file there was only a rosette cast 2, no 1.
I changed all of the cast values to 2 for station 64.
Station 91 has cast 2. There were 16 casts for this station, with
cast 17 looking like the one that actually collected bottle data. I
changed all cast values for station 91 to 17.
Station 92 has multiple cast values. The sum file lists only
cast 3. I changed all station 92 cast values to 3. This seems
like the most questionable change, as Debra Willey had casts
1,2, and 3 listed for station 92.
Station 1 had cast 1. I changed this to cast 2.
In summary, I made the following cast changes:
Station 1 1 => 2
Station 52 1 => 2
Station 64 1 => 2
Station 91 2 => 17
Station 92 1 => 3, 2 => 3
After making these changes I was able to merge the following columns:
CFC-11,CFC-11_FLAG_W,CFC-12,CFC-12_FLAG_W,CFC113,CFC113_FLAG_W
ucsb_cdom_i6s_s7a_20090130.txt CDOM data from Norman Nelson at UCSB
-I first ran this translate command on the file: tr '\r' '\n'
-Changed data from tab delimited to csv.
- Translated CDOM names and quality flags to match our parameter list.
- The parameter CDOM was already in the bottle files, with units of
325_1/M. I removed the CDOM column since CDOM325 was included with
the new merge file.
The following parameters were merged:
CDOM325,CDOM325_FLAG_W,CDOM340,CDOM340_FLAG_W,CDOM380,CDOM380_FLAG_W,
CDOM412,CDOM412_FLAG_W,CDOM443,CDOM_443_FLAG_W,CDOM490,CDOM490_FLAG_W,
CDOM555,CDOM555_FLAG_W,CDOMSL,CDOMSL_FLAG_W,CDOMSN,CDOMSN_FLAG_W
I created a new woce bottle file from this exchange file. Two
columns from the old woce bottle file are missing in the new
one that was generated from the exchange bottle file: CTDRAW and
THETA. The units for three parameters were also changed
New cruise report includes:
ODF CTD & Bottle data reports
Updated Data Processing Notes
>> Posted May 6, 2009 (M.C.Johnson/P.Nahavandi)
CLIVAR - I06S-2008 FINAL CTD + Bottle data and Documentation
Final CTD and Bottle data are available in several formats:
WHP-Exchange format (_hy1.csv/_ct1.csv)
WHP90.1 format (i06s.sum/i06s.sea/*.ctd)
and WHP NetCDF format (CTD only, *.nc).
Descriptions of formats and parameter names can be found at
http://cchdo.ucsd.edu/format.htm
Full ODF documentation is now available.
------------------
May 2009 revisions: a few more quality code errors were found and
corrected for CTD and bottle data. Both bottle files have been
regenerated and include the coding changes; the .sum file was
re-created but has not changed.
Data files for CTD stations 9/2, 10/1, 101/2 and 102/1 have been
rewritten to update quality coding. CTD station 14/2 is still
reported using primary TC data (01402 standard file prefix), but
secondary TC data is somewhat better at deeper pressures. The
secondary TC data are now also reported in separate files
(01402-2 file prefix), so end-users can pick and choose the data
set with the least noise for the area of greatest interest.
ODF documentation has been finalized and is included with the data.
------------------
Nov. 2008 - Mar. 2009 revisions: a few quality codes were corrected
for CTD data, fluorometer quality codes 5 or 9 were added for a
malfunctioning or absent fluorometer on stas 22-32. "Uncalibrated
data" code 1 was added for fluorometer, transmissometer, PAR and SPAR
for stations 72-77 and 84, where those codes were missing; they were
already coded as such for all other casts. The CTD calibrations were
updated for stations 81-106; the changes should only cause minor
changes to the reported CTD data.
A few more bottle data issues were also found and resolved; most were
conflicts between Sample Log notations and samples uploaded into the
database for a few analyses. The parameter lists for each cast in
the .sum file may differ as a result of some of these changes.
------------------
Oct. 2008 - Nov. 2008 revisions: a few problems in the stored GPS
navigation (position) data were resolved, resulting in updated
positions for stations 5-7, 75 and 93. Quality codes for despiked
(code 7) and interpolated (code 6) CTD levels have been applied,
but quality code 3 or 4 supersedes either of these codes in the
CTD data files.
------------------
There are major problems with noisy CTD data (signal transmission,
sensor and/or pump problems, to name a few), particularly on
stations 2/1, 3/2, 6-18, late 60s through 80, 84, 102 and 103.
Secondary T/C sensors were used where it was possible to improve the
quality of the CTD data by using them. Broad despiking filters were
applied to these noisy casts, and attempts were made to do preliminary
coding of bigger CTD data problems. No special fitting of T/C/O2 to
SBE35RT/bottle data for these casts with major noise/pump problems
was attempted, but rather they were substantially coded questionable.
Details are provided in the accompanying documentation.
Only the most basic processing (block-averaging) was performed on the
Trace Metal CTD data; 2007 SBE calibration information was provided
by U. of Hawaii and applied to Pressure, Temperature and Conductivity
(Salinity). No corrections were applied to Fluorometer data, and very
basic oxygen fits using nearby casts' oxygen data were applied to TM
Oxygen data in order to get them in the ballpark.
The files named "i06s*.zip" were created with the Linux zip (v2.31)
utility for the benefit of PC users. The data can be expanded into
the directory "./I06S-2008" (or ./I06S-TM-2008 for TM casts) using
"unzip" or "pkunzip" utilities. Note that pkunzip 2.04g or unzip 5.0p1
(or later versions) must be used to extract files produced by pkzip
2.04 or zip 2.3. Earlier versions are not compatible.
CONTENTS of the directory ./I06S-2008 (approximately 39 Mbytes expanded),
broken down by .zip-file contents:
README.I06S comments regarding prelim. data release/documentation
i06s_hy1.csv bottle data in WHP-Exchange format
i06s.sum station-cast description file in WHP90-1/rev.2 (WOCE) format
i06s.sea bottle data in WHP90-1/rev.2 (WOCE) format
i06s_ct1.zip CTD data in WHP-Exchange format (I06S-2008/ssscc_ct1.csv)
i06s_ctd.zip CTD data in WHP90-1/rev.2 (WOCE) format (I06S-2008/ssscc.ctd)
i06s_nc.zip CTD data in NetCDF format (I06S-2008/ssscc.nc)
(sss = station number cc = cast number)
109 CTD casts reported (stations 1-106, 2 casts reported for stas 2,72,81)
only last yoyo cast (17) reported for sta 91
NOTE: files named 01402-2.* contain secondary TC data for station 01402
Added Nov. 18, 2008: PRELIMINARY Trace Metal bottle data and CTD casts (i06s-tm.zip).
Trace Metal data in WHP-Exchange format (sub-directory I06S-TM-2008):
I06S-TM-2008/i06s-tm_hy1.csv I06S TM bottle data
I06S-TM-2008/ssscc_ct1.csv I06S TM CTD data
30 TM CTD casts, stations 1-43, typically every other cast
(2 casts each for stas 11,12,21,25,29,33,37,41)
Added May 6, 2009: FINAL ODF DOCUMENTATION files (in i06s_doc.zip):
I06S_DOC/i06sdoc.pdf I06S documentation in Adobe pdf format
I06S_DOC/i06sdoc.txt I06S documentation in ascii/plain text - no figures
QUESTIONS:
Chief Scientist:
Dr. Kevin Speer email: kspeer@fsu.edu phone: 850-645-4846
Oceanography
Florida State University
105 N. Woodward Ave.
Tallahassee, FL 32306-4320
Questions regarding ODF data should be directed to:
Bottle: Kristin M. Sanborn email: ksanborn@ucsd.edu phone: 858-534-1903
STS/ODF, Mail Code 0214
SIO/UC San Diego
9500 Gilman Drive
La Jolla, CA 92093-0214
CTD: Parisa Nahavandi email: parisa@ucsd.edu phone: 858-534-8262
or Mary Carol Johnson email: mcj@ucsd.edu phone: 858-534-1906
(both same physical address as Kristin)
Expocode: 33RR20080204 Ship: R/V Roger Revelle Woce Line: I06S Note: May 2009 revisions: a few more quality code errors were found and corrected for CTD and bottle data. Both bottle files have been regenerated and include the coding changes; the .sum file was re-created but has not changed. Data files for CTD stations 9/2, 10/1, 101/2 and 102/1 have been rewritten to update quality coding. CTD station 14/2 is still reported using primary TC data (01402 standard file prefix), but secondary TC data is somewhat better at deeper pressures. The secondary TC data are now also reported in separate files (01402-2 file prefix), so end-users can pick and choose the data set with the least noise for the area of greatest interest. ODF documentation has been finalized and is included with the data.
20090415
I noticed that the bottle files for I06s have
CFC-113 instead of CFC113. I changed CFC-113 to CFC113.
I06S_2008_CFCs.csv from Debra Willey
In this file data from station 64 was listed form cast 1.
According to the sum file there was only a rosette cast 2, no 1.
I changed all of the cast values to 2 for station 64.
Station 91 has cast 2. There were 17 casts for this station, with
cast 17 looking like the one that actually collected bottle data. I
changed all cast values for station 91 to 17.
Station 92 has multiple cast values. The sum file lists only
cast 3. I changed all station 92 cast values to 3. This seems
like the most questionable change, as Debra Willey had casts
1,2, and 3 listed for station 92.
Station 1 had cast 1. I changed this to cast 2.
In summary, I made the following cast changes:
Station 1 1 => 2
Station 52 1 => 2
Station 64 1 => 2
Station 91 2 => 17
Station 92 1 => 3, 2 => 3
After making these changes I was able to merge the following columns:
CFC-11,CFC-11_FLAG_W,CFC-12,CFC-12_FLAG_W,CFC113,CFC113_FLAG_W
ucsb_cdom_i6s_s7a_20090130.txt CDOM data from Norman Nelson at UCSB
-I first ran this translate command on the file: tr '\r' '\n'
-Changed data from tab delimited to csv.
- Translated CDOM names and quality flags to match our parameter list.
- The parameter CDOM was already in the bottle files, with units of
325_1/M. I removed the CDOM column since CDOM325 was included with
the new merge file.
The following parameters were merged:
CDOM325,CDOM325_FLAG_W,CDOM340,CDOM340_FLAG_W,CDOM380,CDOM380_FLAG_W,
CDOM412,CDOM412_FLAG_W,CDOM443,CDOM_443_FLAG_W,CDOM490,CDOM490_FLAG_W,
CDOM555,CDOM555_FLAG_W,CDOMSL,CDOMSL_FLAG_W,CDOMSN,CDOMSN_FLAG_W
I created a new woce bottle file from this exchange file. Two
columns from the old woce bottle file are missing in the new
one that was generated from the exchange bottle file: CTDRAW and
THETA. I have not created a new netcdf archive for these data.
Mary sent updated ctd, bottle, and
sum files on March 6th, I put them online on March 9th.
Expocode: 33RR20080204 Ship: R/V Roger Revelle Woce Line: I06S Note: Nov. 2008 - Mar. 2009 revisions: a few quality codes were corrected for CTD data, fluorometer quality codes 5 or 9 were added for a malfunctioning or absent fluorometer on stas 22-32. "Uncalibrated data" code 1 was added for fluorometer, transmissometer, PAR and SPAR for stations 72-77 and 84, where those codes were missing; they were already coded as such for all other casts. The CTD calibrations were updated for stations 81-106; the changes should only cause minor changes to the reported CTD data.
Expocode: 33RR20080204 Ship: R/V Roger Revelle Woce Line: I06S Note: Nov. 2008 - Mar. 2009 revisions: a few quality codes were corrected for CTD data, fluorometer quality codes 5 or 9 were added for a malfunctioning or absent fluorometer on stas 22-32. "Uncalibrated data" code 1 was added for fluorometer, transmissometer, PAR and SPAR for stations 72-77 and 84, where those codes were missing; they were already coded as such for all other casts. The CTD calibrations were updated for stations 81-106; the changes should only cause minor changes to the reported CTD data.
Expocode: 33RR20080204 Ship: R/V Roger Revelle Woce Line: I06S Note: Nov. 2008 - Mar. 2009 revisions: a few quality codes were corrected for CTD data, fluorometer quality codes 5 or 9 were added for a malfunctioning or absent fluorometer on stas 22-32. "Uncalibrated data" code 1 was added for fluorometer, transmissometer, PAR and SPAR for stations 72-77 and 84, where those codes were missing; they were already coded as such for all other casts. The CTD calibrations were updated for stations 81-106; the changes should only cause minor changes to the reported CTD data.
Expocode: 33RR20080204 Ship: R/V Roger Revelle Woce Line: I06S Note: Nov. 2008 - Mar. 2009 revisions: The CTD calibrations were updated for stations 81-106; the changes should only cause minor changes to the reported CTD data. A few more bottle data issues were also found and resolved; most were conflicts between Sample Log notations and samples uploaded into the ODF database for a few analyses.
Nov. 2008 - Mar. 2009 revisions: a few quality codes were corrected for CTD data, fluorometer quality codes 5 or 9 were added for a malfunctioning or absent fluorometer on stas 22-32. "Uncalibrated data" code 1 was added for fluorometer, transmissometer, PAR and SPAR for stations 72-77 and 84, where those codes were missing; they were already coded as such for all other casts. The CTD calibrations were updated for stations 81-106; the changes should only cause minor changes to the reported CTD data.
A few more bottle data issues were also found and resolved; most were conflicts between Sample Log notations and samples uploaded into the ODF database for a few analyses.
Expocode: 33RR20080204 Ship: None Woce Line: I06S Note: I am submitting the final CFCs for I06S 2008. In addition, I will submit a correction to the documentation.
This submission is a correction to the documentation file. This paragraph should replace the Calibration paragraph in the CFC section of the documentation.
I am submitting the final CFCs for I06S 2008. In addition, I will submit a correction to the documentation.
Expocode: 33RR20080204 Ship: R/V Roger Revelle Woce Line: I6S Note: None
<font color='red'><i>These data have been submitted to the CCHDO and are scheduled to be merged into the online bottle data files soon. The Alkalinity data in the bottle files are still preliminary at this time.</i> </font><hr>
<b>Andrew Dickson wrote: </b><i>"Here are our final I06S total alkalinity data (together with the rest). I am now finalizing our report on this data set, and hope to have it to you shortly."</i>
I've placed the sum file, exchange bottle, and exchange ctd files up on cchdo.
These data are marked as preliminary.
Expo: 33RR20080204 Line: I06S
Date: 2008-02-04
Action: Place Online
>> Posted November 7, 2008 (M.C.Johnson/P.Nahavandi)
CLIVAR - I06S-2008 PRELIMINARY CTD + Bottle data
Preliminary CTD and Bottle data are available in several formats:
WHP-Exchange format (_hy1.csv/_ct1.csv)
WHP90.1 format (i06s.sum/i06s.sea/*.ctd)
and WHP NetCDF format (CTD only, *.nc).
Descriptions of formats and parameter names can be found at
http://cchdo.ucsd.edu/format.htm
Full ODF documentation will be available when final processed data are released.
Since Oct. 2008, a few problems in the stored GPS navigation (position) data
were resolved, resulting in updated position data for stations 5-7, 75 and 93.
Quality codes for despiked (code 7) and interpolated (code 6) CTD levels have
been applied, but quality code 3 or 4 supersedes either of these codes in the
CTD data files.
CTD data T and C/O2 have been corrected to SBE35RT and bottle data (respectively),
grouped by sensor serial numbers; no casts have been adjusted individually.
T/S and T/O2 overlay plots will be used to fine-tune corrections, then final
Pressure/Property plots will be examined to insure any remaining problems
with individual casts are investigated, documented and/or quality-coded.
There is a 0.002 mS/cm difference between pre- to post-cruise Sea-Bird
Conductivity calibration results and shipboard salinity values (shipboard
values are lower). Discussions with SeaBird are continuing, and comparisons
of two different IAPSO SSW standard batches are pending. The issue will be
addressed and documented before data are finalized.
There are major problems with noisy CTD data (signal transmission, sensor and/or
pump problems, to name a few) on stations 2/1, 3/2, 6-18, late 60s through 80,
84, 102 and 103 (perhaps others). Secondary T/C sensors were used where it was
possible to improve the quality of the CTD data by using them. Broad despiking
filters were applied to these noisy casts, and attempts were made to do
preliminary coding of bigger CTD data problems. No special fitting of T/C/O2 to
SBE35RT/bottle data for these casts with major noise/pump problems was attempted,
but rather they were substantially coded questionable.
The files named "i06s*.zip" were created with the Linux zip (v2.31) utility
for the benefit of PC users. The data can be expanded into the directory
"./I06S-2008" using "unzip" or "pkunzip" utilities. Note that pkunzip 2.04g
or unzip 5.0p1 (or later versions) must be used to extract files produced by
pkzip 2.04 or zip 2.3. Earlier versions are not compatible.
CONTENTS of the directory ./I06S-2008 (approximately 39 Mbytes expanded),
broken down by .zip-file contents:
README.I06S comments regarding prelim. data release/documentation
i06s_hy1.csv bottle data in WHP-Exchange format
i06s.sum station-cast description file in WHP90-1/rev.2 (WOCE) format
i06s.sea bottle data in WHP90-1/rev.2 (WOCE) format
i06s_ct1.zip CTD data in WHP-Exchange format (I06S-2008/ssscc_ct1.csv)
i06s_ctd.zip CTD data in WHP90-1/rev.2 (WOCE) format (I06S-2008/ssscc.ctd)
i06s_nc.zip CTD data in NetCDF format (I06S-2008/ssscc.nc)
109 CTD casts reported (stations 1-106, 2 casts reported for stas 2,72,81)
only last yoyo cast (17) reported for sta 91
(sss = station number cc = cast number)
QUESTIONS:
Chief Scientist:
Dr. Kevin Speer email: kspeer@fsu.edu phone: 850-645-4846
Oceanography
Florida State University
105 N. Woodward Ave.
Tallahassee, FL 32306-4320
Questions regarding ODF data should be directed to:
Bottle: Kristin M. Sanborn email: ksanborn@ucsd.edu phone: 858-534-1903
STS/ODF, Mail Code 0214
SIO/UC San Diego
9500 Gilman Drive
La Jolla, CA 92093-0214
CTD: Parisa Nahavandi email: parisa@ucsd.edu phone: 858-534-8262
or Mary Carol Johnson email: mcj@ucsd.edu phone: 858-534-1906
(both same physical address as Kristin)
Yes, the I6S bottle data may now go on line
Swift and Sanborn agreed to delay data being put online until ODF has a chance to verify accuracy of data.