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ExpoCode: 33RR20080204

Line: I06S

Aliases: Knox 14,KNOX14RR

Ship/Country: ROGER REVELLE/USA

Chief Scientists: K. Speer/FSU

Cruise Dates: Mon Feb 4, 2008 -Mon Mar 17, 2008

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Files As Received

See data history below

Unmerged

File	Date Received	Date Merged
33RR20080204.exc.csv	2012-12-06	Not merged
Final C14 and C13 data (with errors and flags). Flags and values vetted between PU and NOSAMS

Merged

File	Date Received	Date Merged
i06s_33RR20080204_hy1_DOC_Final_2...	2009-11-23	2009-11-24
The DOC data submitted by Craig Carlson (UCSB) to CDIAC on Sep. 29, 2009.
i06s_hy1_TCO2_TALK_final_20091104...	2009-11-05	2009-11-24
The final TCARB (R. Wanninkhof) and ALKALI (A. Dickson) submitted by Alex Kozyr
I06S_2008_CFCs.csv	2009-03-05	2009-07-17

ucsb_cdom_i6s_s7a_20090130.txt	2009-01-30	2009-07-17

Data History

Permalink	Date	Person	Data Type	Action	Summary
333076	2012-12-06	Key, Bob	DELC13/DELC14	Submitted	Final data with errors and flags
This file contains the final C14 and C13 data (with errors and flags) for this cruise (33RR20080204). As usual, the data can be made public immediately. Flags and values vetted between PU and NOSAMS.
333084	2012-12-06	Staff, CCHDO	C14 and C13 with flags	Website Update	Available under 'Files as received'
The following files are now available online under 'Files as received', unprocessed by the CCHDO. 33RR20080204.exc.csv
332502	2011-08-23	Diggs, Steve	CTD/BTL	Data Status Update	Data are no longer listed as 'preliminary'
Ref: email from K. Sanborn and J. Swift (2011.08.23)
332278	2010-09-13	Berys, Carolina	BTL	Website Update	Citations added
File i06s_33RR20080204_hy1.csv datestamp: 20091030CCHDOSIOJCF original moved to: original/i06s_33RR20080204_rplcd_20100913_hy1.csv Citations added by A. Barna Formatted using copy_exchange_bot.rb (J. Fields) working directory: original/2010.09.13_I06S_citation_CBG
331986	2009-11-24	Fields, Justin	DOC	Website Update	New data online
I've merged the DOC data that Alex Kozyr sent on 2009-11-23. The DOC data was reported with 4 decimal places, this was rounded to two decimal places. These data merged smoothly with no problems, and checked out in the bottle compare tool. Conversion to woce and netCDF format also went smoothly.
331985	2009-11-23	Kozyr, Alex	DOC	Submitted	Merge, put online
Merge Data, Place Online. The DOC data submitted by Craig Carlson (UCSB) to CDIAC on Sep. 29, 2009.
331988	2009-11-16	Fields, Justin	CO2	Website Update	Kozyr data online
I've merged the ALKALI and TCARBN data that Alex Kozyr sent on 2009-11-05. This data merged smoothly with no problems, and checked out in the bottle compare tool.
331967	2009-11-05	Kozyr, Alex	CO2	Submitted	To go online
Merge Data, Place Online, Updated Parameters Notes: The final TCARB (R. Wanninkhof) and ALKALI (A. Dickson) are attached. Please, let me know when the data vill be mesged into master file at CCHDO.
331688	2009-07-17	Fields, Justin	CFCs/CDOM	Website Update	data merged, online
20090707 I'm reapplying the CFC data submitted by Debra Willey and the cdom data submitted by Norm Nelson to the most recent ODF files, submitted on 20090506. In the exchange bottle file I changed O18O16 to DELO18. From Debra Willey's submitted data I merged: CFC-11,CFC-11_FLAG_W CFC-12,CFC-12_FLAG_W CFC113,CFC113_FLAG_W From Norm Nelson's data I merged: CDOM325, CDOM325_FLAG_W CDOM340, CDOM340_FLAG_W CDOM380, CDOM380_FLAG_W CDOM412, CDOM412_FLAG_W CDOM443, CDOM_443_FLAG_W (this flag has an inconsistant name) CDOM490, CDOM490_FLAG_W CDOM555, CDOM555_FLAG_W CDOMSL, CDOMSL_FLAG_W CDOMSN, CDOMSN_FLAG_W I removed the empty CDOM column. ------------------------------------------------------------------------ 20090415 I noticed that the bottle files for I06s have CFC-113 instead of CFC113. I changed CFC-113 to CFC113. I06S_2008_CFCs.csv from Debra Willey In this file data from station 64 was listed form cast 1. According to the sum file there was only a rosette cast 2, no 1. I changed all of the cast values to 2 for station 64. Station 91 has cast 2. There were 16 casts for this station, with cast 17 looking like the one that actually collected bottle data. I changed all cast values for station 91 to 17. Station 92 has multiple cast values. The sum file lists only cast 3. I changed all station 92 cast values to 3. This seems like the most questionable change, as Debra Willey had casts 1,2, and 3 listed for station 92. Station 1 had cast 1. I changed this to cast 2. In summary, I made the following cast changes: Station 1 1 => 2 Station 52 1 => 2 Station 64 1 => 2 Station 91 2 => 17 Station 92 1 => 3, 2 => 3 After making these changes I was able to merge the following columns: CFC-11,CFC-11_FLAG_W,CFC-12,CFC-12_FLAG_W,CFC113,CFC113_FLAG_W ucsb_cdom_i6s_s7a_20090130.txt CDOM data from Norman Nelson at UCSB -I first ran this translate command on the file: tr '\r' '\n' -Changed data from tab delimited to csv. - Translated CDOM names and quality flags to match our parameter list. - The parameter CDOM was already in the bottle files, with units of 325_1/M. I removed the CDOM column since CDOM325 was included with the new merge file. The following parameters were merged: CDOM325,CDOM325_FLAG_W,CDOM340,CDOM340_FLAG_W,CDOM380,CDOM380_FLAG_W, CDOM412,CDOM412_FLAG_W,CDOM443,CDOM_443_FLAG_W,CDOM490,CDOM490_FLAG_W, CDOM555,CDOM555_FLAG_W,CDOMSL,CDOMSL_FLAG_W,CDOMSN,CDOMSN_FLAG_W I created a new woce bottle file from this exchange file. Two columns from the old woce bottle file are missing in the new one that was generated from the exchange bottle file: CTDRAW and THETA. The units for three parameters were also changed
331682	2009-07-07	Kappa, Jerry	Cruise Report	Website Update	Updated PDF & txt files online
New cruise report includes: ODF CTD & Bottle data reports Updated Data Processing Notes
331653	2009-05-07	Nahavandi,	CTD/BTL/SUM	Submitted	revised data & documentation
>> Posted May 6, 2009 (M.C.Johnson/P.Nahavandi) CLIVAR - I06S-2008 FINAL CTD + Bottle data and Documentation Final CTD and Bottle data are available in several formats: WHP-Exchange format (_hy1.csv/_ct1.csv) WHP90.1 format (i06s.sum/i06s.sea/.ctd) and WHP NetCDF format (CTD only, .nc). Descriptions of formats and parameter names can be found at http://cchdo.ucsd.edu/format.htm Full ODF documentation is now available. ------------------ May 2009 revisions: a few more quality code errors were found and corrected for CTD and bottle data. Both bottle files have been regenerated and include the coding changes; the .sum file was re-created but has not changed. Data files for CTD stations 9/2, 10/1, 101/2 and 102/1 have been rewritten to update quality coding. CTD station 14/2 is still reported using primary TC data (01402 standard file prefix), but secondary TC data is somewhat better at deeper pressures. The secondary TC data are now also reported in separate files (01402-2 file prefix), so end-users can pick and choose the data set with the least noise for the area of greatest interest. ODF documentation has been finalized and is included with the data. ------------------ Nov. 2008 - Mar. 2009 revisions: a few quality codes were corrected for CTD data, fluorometer quality codes 5 or 9 were added for a malfunctioning or absent fluorometer on stas 22-32. "Uncalibrated data" code 1 was added for fluorometer, transmissometer, PAR and SPAR for stations 72-77 and 84, where those codes were missing; they were already coded as such for all other casts. The CTD calibrations were updated for stations 81-106; the changes should only cause minor changes to the reported CTD data. A few more bottle data issues were also found and resolved; most were conflicts between Sample Log notations and samples uploaded into the database for a few analyses. The parameter lists for each cast in the .sum file may differ as a result of some of these changes. ------------------ Oct. 2008 - Nov. 2008 revisions: a few problems in the stored GPS navigation (position) data were resolved, resulting in updated positions for stations 5-7, 75 and 93. Quality codes for despiked (code 7) and interpolated (code 6) CTD levels have been applied, but quality code 3 or 4 supersedes either of these codes in the CTD data files. ------------------ There are major problems with noisy CTD data (signal transmission, sensor and/or pump problems, to name a few), particularly on stations 2/1, 3/2, 6-18, late 60s through 80, 84, 102 and 103. Secondary T/C sensors were used where it was possible to improve the quality of the CTD data by using them. Broad despiking filters were applied to these noisy casts, and attempts were made to do preliminary coding of bigger CTD data problems. No special fitting of T/C/O2 to SBE35RT/bottle data for these casts with major noise/pump problems was attempted, but rather they were substantially coded questionable. Details are provided in the accompanying documentation. Only the most basic processing (block-averaging) was performed on the Trace Metal CTD data; 2007 SBE calibration information was provided by U. of Hawaii and applied to Pressure, Temperature and Conductivity (Salinity). No corrections were applied to Fluorometer data, and very basic oxygen fits using nearby casts' oxygen data were applied to TM Oxygen data in order to get them in the ballpark. The files named "i06s.zip" were created with the Linux zip (v2.31) utility for the benefit of PC users. The data can be expanded into the directory "./I06S-2008" (or ./I06S-TM-2008 for TM casts) using "unzip" or "pkunzip" utilities. Note that pkunzip 2.04g or unzip 5.0p1 (or later versions) must be used to extract files produced by pkzip 2.04 or zip 2.3. Earlier versions are not compatible. CONTENTS of the directory ./I06S-2008 (approximately 39 Mbytes expanded), broken down by .zip-file contents: README.I06S comments regarding prelim. data release/documentation i06s_hy1.csv bottle data in WHP-Exchange format i06s.sum station-cast description file in WHP90-1/rev.2 (WOCE) format i06s.sea bottle data in WHP90-1/rev.2 (WOCE) format i06s_ct1.zip CTD data in WHP-Exchange format (I06S-2008/ssscc_ct1.csv) i06s_ctd.zip CTD data in WHP90-1/rev.2 (WOCE) format (I06S-2008/ssscc.ctd) i06s_nc.zip CTD data in NetCDF format (I06S-2008/ssscc.nc) (sss = station number cc = cast number) 109 CTD casts reported (stations 1-106, 2 casts reported for stas 2,72,81) only last yoyo cast (17) reported for sta 91 NOTE: files named 01402-2. contain secondary TC data for station 01402 Added Nov. 18, 2008: PRELIMINARY Trace Metal bottle data and CTD casts (i06s-tm.zip). Trace Metal data in WHP-Exchange format (sub-directory I06S-TM-2008): I06S-TM-2008/i06s-tm_hy1.csv I06S TM bottle data I06S-TM-2008/ssscc_ct1.csv I06S TM CTD data 30 TM CTD casts, stations 1-43, typically every other cast (2 casts each for stas 11,12,21,25,29,33,37,41) Added May 6, 2009: FINAL ODF DOCUMENTATION files (in i06s_doc.zip): I06S_DOC/i06sdoc.pdf I06S documentation in Adobe pdf format I06S_DOC/i06sdoc.txt I06S documentation in ascii/plain text - no figures QUESTIONS: Chief Scientist: Dr. Kevin Speer email: kspeer@fsu.edu phone: 850-645-4846 Oceanography Florida State University 105 N. Woodward Ave. Tallahassee, FL 32306-4320 Questions regarding ODF data should be directed to: Bottle: Kristin M. Sanborn email: ksanborn@ucsd.edu phone: 858-534-1903 STS/ODF, Mail Code 0214 SIO/UC San Diego 9500 Gilman Drive La Jolla, CA 92093-0214 CTD: Parisa Nahavandi email: parisa@ucsd.edu phone: 858-534-8262 or Mary Carol Johnson email: mcj@ucsd.edu phone: 858-534-1906 (both same physical address as Kristin)
331650	2009-04-30	Fields, Justin	CDOM/CFCs	Website Updated	data online
20090415 I noticed that the bottle files for I06s have CFC-113 instead of CFC113. I changed CFC-113 to CFC113. I06S_2008_CFCs.csv from Debra Willey In this file data from station 64 was listed form cast 1. According to the sum file there was only a rosette cast 2, no 1. I changed all of the cast values to 2 for station 64. Station 91 has cast 2. There were 17 casts for this station, with cast 17 looking like the one that actually collected bottle data. I changed all cast values for station 91 to 17. Station 92 has multiple cast values. The sum file lists only cast 3. I changed all station 92 cast values to 3. This seems like the most questionable change, as Debra Willey had casts 1,2, and 3 listed for station 92. Station 1 had cast 1. I changed this to cast 2. In summary, I made the following cast changes: Station 1 1 => 2 Station 52 1 => 2 Station 64 1 => 2 Station 91 2 => 17 Station 92 1 => 3, 2 => 3 After making these changes I was able to merge the following columns: CFC-11,CFC-11_FLAG_W,CFC-12,CFC-12_FLAG_W,CFC113,CFC113_FLAG_W ucsb_cdom_i6s_s7a_20090130.txt CDOM data from Norman Nelson at UCSB -I first ran this translate command on the file: tr '\r' '\n' -Changed data from tab delimited to csv. - Translated CDOM names and quality flags to match our parameter list. - The parameter CDOM was already in the bottle files, with units of 325_1/M. I removed the CDOM column since CDOM325 was included with the new merge file. The following parameters were merged: CDOM325,CDOM325_FLAG_W,CDOM340,CDOM340_FLAG_W,CDOM380,CDOM380_FLAG_W, CDOM412,CDOM412_FLAG_W,CDOM443,CDOM_443_FLAG_W,CDOM490,CDOM490_FLAG_W, CDOM555,CDOM555_FLAG_W,CDOMSL,CDOMSL_FLAG_W,CDOMSN,CDOMSN_FLAG_W I created a new woce bottle file from this exchange file. Two columns from the old woce bottle file are missing in the new one that was generated from the exchange bottle file: CTDRAW and THETA. I have not created a new netcdf archive for these data.
331649	2009-03-09	Fields, Justin	CTD/BTL/SUM	Website Updated	M. Johnson's new files online
Mary sent updated ctd, bottle, and sum files on March 6th, I put them online on March 9th.
331623	2009-03-06	Johnson, Mary	CTD/BTL/SUM	Submitted	Revised data
Nov. 2008 - Mar. 2009 revisions: a few quality codes were corrected for CTD data, fluorometer quality codes 5 or 9 were added for a malfunctioning or absent fluorometer on stas 22-32. "Uncalibrated data" code 1 was added for fluorometer, transmissometer, PAR and SPAR for stations 72-77 and 84, where those codes were missing; they were already coded as such for all other casts. The CTD calibrations were updated for stations 81-106; the changes should only cause minor changes to the reported CTD data. A few more bottle data issues were also found and resolved; most were conflicts between Sample Log notations and samples uploaded into the ODF database for a few analyses.
331621	2009-03-05	Willey, Debra	CFCs	Submitted	Final/Public
I am submitting the final CFCs for I06S 2008. In addition, I will submit a correction to the documentation.
331622	2009-03-05	Willey, Debra	Cruise Report	Submitted	CFC report correction
This submission is a correction to the documentation file. This paragraph should replace the Calibration paragraph in the CFC section of the documentation.
332765	2009-01-16	Kappa, Jerry	CrsRpt	Website Updated	New PDF and Text versions online

331580	2008-11-14	Dickson, Andrew	ALKALI	Submitted	Submitted: FINAL DATA (click for detailed information)
<font color='red'><i>These data have been submitted to the CCHDO and are scheduled to be merged into the online bottle data files soon. The Alkalinity data in the bottle files are still preliminary at this time.</i> </font><hr> <b>Andrew Dickson wrote: </b><i>"Here are our final I06S total alkalinity data (together with the rest). I am now finalizing our report on this data set, and hope to have it to you shortly."</i>
331578	2008-11-13	Fields, Justin	CTD/BTL/SUM	Website Update	PRELIMINARY DATA ONLINE
I've placed the sum file, exchange bottle, and exchange ctd files up on cchdo. These data are marked as preliminary.
331574	2008-11-07	Johnson, Mary	CTD/BTL/SUM	Submitted	PRELIMINARY
Expo: 33RR20080204 Line: I06S Date: 2008-02-04 Action: Place Online >> Posted November 7, 2008 (M.C.Johnson/P.Nahavandi) CLIVAR - I06S-2008 PRELIMINARY CTD + Bottle data Preliminary CTD and Bottle data are available in several formats: WHP-Exchange format (_hy1.csv/_ct1.csv) WHP90.1 format (i06s.sum/i06s.sea/.ctd) and WHP NetCDF format (CTD only, .nc). Descriptions of formats and parameter names can be found at http://cchdo.ucsd.edu/format.htm Full ODF documentation will be available when final processed data are released. Since Oct. 2008, a few problems in the stored GPS navigation (position) data were resolved, resulting in updated position data for stations 5-7, 75 and 93. Quality codes for despiked (code 7) and interpolated (code 6) CTD levels have been applied, but quality code 3 or 4 supersedes either of these codes in the CTD data files. CTD data T and C/O2 have been corrected to SBE35RT and bottle data (respectively), grouped by sensor serial numbers; no casts have been adjusted individually. T/S and T/O2 overlay plots will be used to fine-tune corrections, then final Pressure/Property plots will be examined to insure any remaining problems with individual casts are investigated, documented and/or quality-coded. There is a 0.002 mS/cm difference between pre- to post-cruise Sea-Bird Conductivity calibration results and shipboard salinity values (shipboard values are lower). Discussions with SeaBird are continuing, and comparisons of two different IAPSO SSW standard batches are pending. The issue will be addressed and documented before data are finalized. There are major problems with noisy CTD data (signal transmission, sensor and/or pump problems, to name a few) on stations 2/1, 3/2, 6-18, late 60s through 80, 84, 102 and 103 (perhaps others). Secondary T/C sensors were used where it was possible to improve the quality of the CTD data by using them. Broad despiking filters were applied to these noisy casts, and attempts were made to do preliminary coding of bigger CTD data problems. No special fitting of T/C/O2 to SBE35RT/bottle data for these casts with major noise/pump problems was attempted, but rather they were substantially coded questionable. The files named "i06s*.zip" were created with the Linux zip (v2.31) utility for the benefit of PC users. The data can be expanded into the directory "./I06S-2008" using "unzip" or "pkunzip" utilities. Note that pkunzip 2.04g or unzip 5.0p1 (or later versions) must be used to extract files produced by pkzip 2.04 or zip 2.3. Earlier versions are not compatible. CONTENTS of the directory ./I06S-2008 (approximately 39 Mbytes expanded), broken down by .zip-file contents: README.I06S comments regarding prelim. data release/documentation i06s_hy1.csv bottle data in WHP-Exchange format i06s.sum station-cast description file in WHP90-1/rev.2 (WOCE) format i06s.sea bottle data in WHP90-1/rev.2 (WOCE) format i06s_ct1.zip CTD data in WHP-Exchange format (I06S-2008/ssscc_ct1.csv) i06s_ctd.zip CTD data in WHP90-1/rev.2 (WOCE) format (I06S-2008/ssscc.ctd) i06s_nc.zip CTD data in NetCDF format (I06S-2008/ssscc.nc) 109 CTD casts reported (stations 1-106, 2 casts reported for stas 2,72,81) only last yoyo cast (17) reported for sta 91 (sss = station number cc = cast number) QUESTIONS: Chief Scientist: Dr. Kevin Speer email: kspeer@fsu.edu phone: 850-645-4846 Oceanography Florida State University 105 N. Woodward Ave. Tallahassee, FL 32306-4320 Questions regarding ODF data should be directed to: Bottle: Kristin M. Sanborn email: ksanborn@ucsd.edu phone: 858-534-1903 STS/ODF, Mail Code 0214 SIO/UC San Diego 9500 Gilman Drive La Jolla, CA 92093-0214 CTD: Parisa Nahavandi email: parisa@ucsd.edu phone: 858-534-8262 or Mary Carol Johnson email: mcj@ucsd.edu phone: 858-534-1906 (both same physical address as Kristin)
331589	2008-11-03	Swift, Dr. James	BTL	Data Status Update	Data are Public
Yes, the I6S bottle data may now go on line
331500	2008-05-01	Diggs, Steve	BOT	HOLD	No data online until verified by ODF
Swift and Sanborn agreed to delay data being put online until ODF has a chance to verify accuracy of data.

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