|merged||-||-||P16S DCNS data.txt||272.5 kB|
|merged||-||-||P16s BrdU 11-16-07.txt||264.3 kB|
==================================================== P16S 2005 33RR200501 processing - BTL/merge - TRITUM ==================================================== 2015-05-14 C Berys .. contents:: :depth: 2 Submission ========== ====================================== ============= =================== =============== ==== filename submitted by date data type id ====================================== ============= =================== =============== ==== LDEO_NGL_CliVarTritium4CCHDO_P16S.xlsx Robert Newton 2015-04-13 00:00:00 data_suggestion 528 33RR20050106.exc.csv Robert Key 2015-04-20 00:00:00 data_suggestion 2099 ====================================== ============= =================== =============== ==== Parameters ---------- 33RR20050106.exc.csv ~~~~~~~~~~~~~~~~~~~~ - TRITUM _ _ - TRITER _ ..  parameter has quality flag column ..  parameter only has fill values/no reported measured data ..  not in WOCE bottle file ..  merged, see merge_ Process ======= .. _merge: Merge ----- 33RR20050106.exc.csv ~~~~~~~~~~~~~~~~~~~~ Merged 33RR20050106.exc.csv into 33RR20050106_hy1.csv using hydro 0.8.2-40-g569f4c2. :New parameters: TRITUM, TRITUM_FLAG_W, TRITER All comment lines from original file copied back in following merge. 33RR20050106_hy1.csv opened in JOA with no apparent problems. Conversion ---------- ======================= ==================== ======================= file converted from software ======================= ==================== ======================= 33RR20050106_nc_hyd.zip 33RR20050106_hy1.zip hydro 0.8.2-40-g569f4c2 33RR20050106hy.txt 33RR20050106_hy1.csv hydro 0.8.2-40-g569f4c2 ======================= ==================== ======================= Updated Files Manifest ====================== ======================= ================= file stamp ======================= ================= 33RR20050106_hy1.csv 20150511CCHSIOCBG 33RR20050106_nc_hyd.zip 20150511CCHSIOCBG 33RR20050106hy.txt ======================= =================
The following data are now available As Received, unprocessed by the CCHDO. http://cchdo.ucsd.edu/cruise/33RR200501 33RR20050106.exc.csv
The following data are now available As Received, unprocessed by the CCHDO. http://cchdo.ucsd.edu/cruise/33RR200501 LDEO_NGL_CliVarTritium4CCHDO_P16S.xlsx
================================================ P16S 2005 33RR200501 processing - CTD/conversion ================================================ 2014-11-06 A Barna .. contents:: :depth: 2 Process ======= Changes ------- - converted to netCDF - rezipped Exchange file Conversion ---------- ===================== ================== ======================= file converted from software ===================== ================== ======================= 33RR200501_nc_ctd.zip 33RR200501_ct1.csv hydro 0.8.2-44-gc516356 ===================== ================== ======================= All converted files opened in JOA with no apparent problems. Directories =========== :working directory: /data/co2clivar/pacific/p16/p16s_2005a/original/2014.11.06_CTD_AMB :cruise directory: /data/co2clivar/pacific/p16/p16s_2005a Updated Files Manifest ====================== ===================== ================= file stamp ===================== ================= p16s_2005a_ct1.zip 20050217STSSIOODF p16s_2005a_nc_ctd.zip 20050217STSSIOODF ===================== =================
========================================================================= P16S 2005 33RR200501 processing - BTL/merge - HELIUM, DELHE3, NEON, THETA ========================================================================= 2014-10-21 C Berys .. contents:: :depth: 2 Submission ========== ================================ ============= ========== ========== ==== filename submitted by date data type id ================================ ============= ========== ========== ==== P16S_2005_LDEO_NGL_HeNeData.xlsx Robert Newton 2014-09-25 He/Ne 1220 33RR20050106.exc.csv Robert M. Key 2014-09-26 HE/H3/NEON 1225 ================================ ============= ========== ========== ==== Parameters ---------- P16S_2005_LDEO_NGL_HeNeData.xlsx ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - DELHE3 _ _ - DELHER _ _ - He4ccSTPg - He4ErccSTPg - HELIUM _ _ - HELIER _ _ - NeccSTPg - NeErccSTPg - NEON _ _ - NEONER _ _ 33RR20050106.exc.csv ~~~~~~~~~~~~~~~~~~~~ - CTDPRS - CTDTMP - CTDSAL _ - SALNTY _ - CTDOXY _ - OXYGEN _ - SILCAT _ - NITRAT _ - NITRIT _ - PHSPHT _ - CFC-11 _ - CFC-12 _ - CFC113 _ - TCARBN _ - ALKALI _ - HELIUM _ _ - DELHE3 _ _ - DELC13 _ - DELC14 _ - C14ERR - NEON _ _ _ - NEONER _ _ - DOC _ - HELIER _ - DELHER _ - CDOM325 _ _ - CDOM340 _ _ - CDOM380 _ _ - CDOM412 _ _ - CDOMSL _ _ - CDOMSN _ _ - THETA _ _ ..  parameter has quality flag column ..  parameter only has fill values/no reported measured data ..  not in WOCE bottle file ..  merged, see merge_ Process ======= Changes ------- P16S_2005_LDEO_NGL_HeNeData.xlsx ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - changed HELIUM flag at 61-3-21 to 4 33RR20050106.exc.csv ~~~~~~~~~~~~~~~~~~~~ - changed HELIUM flag at 61-3-21 to 4 33RR20050106_hy1.csv ~~~~~~~~~~~~~~~~~~~~ - renamed from p16s_2005a_hy1.csv .. _merge: Merge ----- P16S_2005_LDEO_NGL_HeNeData.xlsx ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Merged by Bob Key into 33RR20050106.exc.csv, see below. 33RR20050106.exc.csv ~~~~~~~~~~~~~~~~~~~~ New parameters merged by Bob Key into 33RR20050106.exc.csv. Merged 33RR20050106.exc.csv into 33RR20050106_hy1.csv using hydro 0.8.2-40-g569f4c2. :New parameters: HELIUM, HELIUM_FLAG_W, DELHE3, DELHE3_FLAG_W, NEON, NEON_FLAG_W, NEONER, HELIER, DELHER, THETA All comment lines from original file copied back in following merge. 33RR20050106_hy1.csv opened in JOA with no apparent problems. Conversion ---------- ======================= ==================== ======================= file converted from software ======================= ==================== ======================= 33RR20050106_nc_hyd.zip 33RR20050106_hy1.zip hydro 0.8.2-40-g569f4c2 33RR20050106hy.txt 33RR20050106_hy1.csv hydro 0.8.2-40-g569f4c2 ======================= ==================== ======================= All converted files opened in JOA with no apparent problems. Directories =========== :working directory: /data/co2clivar/pacific/p16/p16s_2005a/original/2014.10.21_HELIUM-H3-NEON_CBG :cruise directory: /data/co2clivar/pacific/p16/p16s_2005a Updated Files Manifest ====================== ======================= ================= file stamp ======================= ================= 33RR20050106_nc_hyd.zip 20141021CCHSIOCBG 33RR20050106hy.txt 33RR20050106_hy1.csv 20141021CCHSIOCBG ======================= =================
The following files are now available online under 'Files as received', unprocessed by the CCHDO. 33RR20050106.exc.csv
File includes recently posted LDEO He,He3,Neon data NOTE LDEO file used bottle 16 rather than 37 for 79-1-37. Fixed here
He, d3He, Ne data from the Schlosser lab. Concentration data are in both ccSTP/g (used in our lab) and nMol/Kg (WOCE reporting standard). 3HE/4He ratio is reported as d3He: percent difference from the ratio in air (which is 1.384 e-6). Contact is Bob Newton: 845-365-8686 (office), 201-679-0263 (cell). My (old) copy of the cruise report has a slightly different expocode: 33RR200502.
The following files are now available online under 'Files as received', unprocessed by the CCHDO. P16S_2005_LDEO_NGL_HeNeData.xlsx
================================ 33RR200501 processing - Citation ================================ 2013-10-25 R Lee .. contents:: :depth: 2 Process ======= Changes ------- - Added instructions for citation use Conversion ---------- ===================== ================== ======================= file converted from software ===================== ================== ======================= p16s_2005a_nc_hyd.zip p16s_2005a_hy1.csv hydro 0.8.0-10-ge326027 ===================== ================== ======================= All converted files opened in JOA with no apparent problems. Directories =========== :working directory: /data/co2clivar/pacific/p16/p16s_2005a/original/2013.10.25_Citations_RJL :cruise directory: /data/co2clivar/pacific/p16/p16s_2005a Updated Files Manifest ====================== - p16s_2005a_nc_hyd.zip - p16s_2005a_hy1.csv
It was discovered that a typo in SALNTY units in the parameters table of the website caused a typo to be inserted in the finished merged bottle file for p16s_2005a. Therefore, the SALNTY units PSS-785 were edited to PSS-78. The date/name stamp was also edited to reflect this change. The standard citation information was also prepended to the file and the 00_README file for this cruise. Old version was moved to the original directory and a notice of this edit was sent to Jerry Kappa for the data history.
I took the p16s 33RR200501 bottle files offline last week at Bob Key's request. Now I've masked the DELC13 column with -999 values, and changed all of the DELC13_FLAG_W values to code 5. I've put the exchange bottle file back online. I still need to produce new woce and netcdf bottle files.
We have discovered a calibration problem with the del 13C data from CLIVAR P16S and P16N. It is possible that the problem exists with other cruises. The C13 data have already been submitted to CCHDO and to CDIAC. I just checked and it appears that only the P16S data are posted, and only at CCHDO. The 13C data are used in the calculation of D14C, however the magnitude of the 13C calibration problem is small enough that the effect on the D14C will be negligible. What to do: CCHDO - please remove the posted 13C data for P16S and do not post those for P16N. The D14C data for P16N can be posted. Please add a note to the "Data History" stating that the data for P16S were removed. Another note will be needed once the corrected data are available. This is not a proprietary data issue, we just don't want a copy of the data that is known to need calibration in circulation. CDIAC - the text for the printed NDP will state the 13C problem. Once the problem is solved, we will submit the corrected 13C data and replacement text for the on-line version of the NDP. We will want to add a note to the data-download web page so that any end user will know what they are getting. Your online data files need the C14 for both cruises.
I have finished merging the following parameters into the P16s_2005a bottle file. I have placed all new files online and run the web_update script without any issues. Below are merging notes, please let me know if you have any questions. No netCDF files could be made at this time. parameters merged: TCARBN, ALKALI , DOC, DELC14, C14ERR, DELC13, FUCO, RHAM, ARABA, GALA GLUC, MAN, DCNS, BRDU, CDOM325, CDOM340, CDOM380, CDOM412, CDOMSL CDOMSN --------------------------------------------------------------------------------------------------------------------- 12.15.2008 DBK Merging Notes for P16s_2005a Attempts to merge various data files using JOA merge tool failed. Data was merged using mrgsea into WOCE-formatted bottle file. Files to be merged: ALKALI: p16s_2005a_TALK_final_08182008.csv sent by Alex Kozyr. File was .csv and was converted to fixed width spaced file in order to use in mrgsea software. Edited file is p16s_2005a_TALK_final_08182008_edt.txt Parameter mnemonic was edited from TALK to ALKALI upone merging. TCARBN, DOC: p16s_2005a_TCO2_DOC_final.csv and p16s_2005a_TCO2_DOC_final.csv.Readme sent by Alex Kozyr. File was .csv and was converted to fixed width spaced file in order to use in mrgsea software. Missing value for DOC was edited from -999.0000 t -9.0000 due to total number of sigificant digits and bytes exceeding WOCE format's limit of 8byte field width. Mrgsea would not merge successfully otherwise. Parameter mnemonic was edited from TCO2 to TCARBN. Edited file is p16s_2005a_TCO2_DOC-9_final_edt.txt DELC14, C14ERR, DELC13: p16s_c14c13.csv was sent by Bob Key. File was .csv format and was converted to fixed width for use with mrgsea. Edited file is p16s_c14c13_edt.txt DCNS and other sugars: p16s_dcns.txt was sent by Craig Carlson. An update was sent on 2008.01.06 by Carlson. File was tab delimited. Converted to fixed width. Edited blank spaces to missing value of -9.0. Rounded all data values to nearest whole number as per PI. However, in order to merge, values were whole numbers with a precision of 1 decimal place set to zero. Edite file is p16s_dcns_test.txt Sugar parameters merged from file are: FUCO, RHAM, ARABA, GALA, GLUC, MAN, DCNS BRDU: p16s_brdu_11.2007.txt was sent by Craig Carlson. An update was sent on 2008.01.06 by Carlson. File was tab delimited. Converted to fixed width. Edited blank spaces to missing value of -9.0. Precision was set to 2 decimal places. Edited file is p16s_brdu_11_2007_edt.txt CDOM: p16scdom_s7a_resubmitted.txt was sent by Norm Nelson. File was tab delimited. Converted to fixed width and edited missing value from -999.0000 to -9.0000 in order to adhere to WOCE format field width constraints. Kept maximum precision of data which was submitted as 4 decimal places. Currently, no information exists on precision of these data. Edited file is p16scdom_s7a_resubmitted_edt.txt Parameters merged from file are: CDOM325, CDOM340, CDOM380, CDOM412, CDOMSL, CDOMSN All parameters merged without error once files were formatted to be accepted by mrgsea. WOCE-format checking could not be completed due to the presence of non-WOCE parameters which are not recognized by the format-checking software. The file was converted to exchange format with no apparent errors. All parameters were included in the exchange file. This file was checked with JOA and no apparent errors were detected. The file could not convert to netcdf due to the presence of unrecognized non-WOCE parameters within the file. The WOCE and exchange formatted files were moved to the cruises parent directory. All previous versions of the bottle file were renamed and moved to the original directory. A copy of this notes file was emailed to Jerry Kappa.
Here are the final ALKALI numbers from Andrew Dickson. Please, merge the data into the HYD file. I noticed that DOC data have not been merged yet. I submitted the DOC numbers last year. TCO2 data are OK.
This replaces previously submitted data based on new instrument calibration.
BrdU 11-16-07.txt Type: Status: public Name: Carlson, Craig Institute: UCSB Country: USA Expo:P16S_33RR200501 Line: P16S Date: 2005-01-01 Action:Merge Data Notes:These data are Bacterial Production data as measure by bromodioxyuridine (BrdU) incorporation. These data are ancillary to the core CDOM data set already submitted. The data are expressed in pmol/L/hr.
DCNS data.txt Type: Status: public Name: Carlson, Craig Institute: UCSB Country: USA Expo:P16S_33RR200501 Line: P16S Date: 2005-01-01 Action:Merge Data Notes:These are ancillary dissoved combined neutral sugar data for the core CDOM data already submitted
File: p16s_2005a_TCO2_DOC_final.csv Type: ASCII Status: Public Name: Kozyr, Alex Institute: CDIAC/ORNL Country: USA Expo:33RR200501 Line: P16S_2005 Date: 01/2005 Action:Merge Data,Place Data Online,Updated Parameters Notes: These are the final DOC and TCO2 data for merging into the hydrographic file. Note, that the data was changed since Craig Carlson last submitted the file to CCHDO and CDIAC. The TCO2 data was not changed since I submitted the file to CCHDO.
File: P16S DOC 11-20-06 submitted.txt Type: BOT Status: Public Name: Carlson, Craig Institute: University of California Santa Barbara Country: USA Expo:33RR200501 Line: P16S Date: 01/2005 Action:Place Data Online Notes:
Here are the latest update on the Carbon Data status at CCHDO and CDIAC. P16S_2005: TCO2 - final data were not merged at CCHDO (data sent to CCHDO on 8/1/2006 by email); TALK - no final data from Dickson; DOC - no final data from Hansell.
We made some corrections to the data files I've sent you yesterday (P16N_2006 and P16S_2005). The new files are attached. Please, discard both yesterday's files.
Here is attached the final TCO2 (TCARBN) data and quality flags for Repeat Hydrography section P16S_2005, EXPOCODE 33RR200501. Please, merge the data into the final hydrographic file. Could you please send me a note that the data was merged
I've just uploaded final DIC data and QC Flags to the web site: http://cchdo.ucsd.edu/ . I did this for Dr's Feely and Sabine. They were uploaded as separate csv files. Please let me know if there are problems and/or questions.
Merged CFC-11, CFC-12, and CFC-113 submitted by D. Willey on Oct. 4, 2005 into online file. In the file she sent sta. 78, cast 1 had a bottle 16 at 1186.0 db but the online file had bottle 37. I compared the cfc values in her file with those in the online file. The values were the same so I changed the bottle number in her file to 37 and merged the data. No other apparent problems. Made exchange and netcdf files.
I have attached P16S CFC data in a csv file and I've also included an ascii text file with a note about the data.e.
The new doc file is now linked into the P16s 2005 webpage on CCHDO.
The cruise p16s 2005 (33RR200501) is now online at the CCHDO website. Work still needs to be done on particular file names and the NetCDF files, but the data is at least available to the public.
Attached is the Chief and Co-Chief Scientists report for P16S 2005 - CCHDO/WHPO expedition code 33RR200501 (Sloyan and Swift).
Updated March 21, 2005 CLIVAR - P16S-2005 Preliminary CTD + Bottle data and ODF documentation Preliminary CTD and Bottle data are available in both WHP90.1 format (.sum/.hyd/.ctd) and WHP-exchange format (_hy1.csv/_ct1.csv). Descriptions of both formats can be found at "http://whpo.ucsd.edu" by clicking in the "Formats" section. (Note that the filename extensions on the WHPO/CLIVAR website may be out of date.) The files named "P16S-2005*.zip" were created with the Linux zip (v2.3) utility for the benefit of PC users. The data can be expanded into the directory "./P16S-2005" using "unzip" or "pkunzip" utilities. Note that pkunzip 2.04g/unzip 5.0p1 (or later versions) must be used to extract files produced by pkzip 2.04 or zip 2.3. Earlier versions are not compatible. CONTENTS of the directory ./P16S-2005 (approximately 39 Mbytes expanded), broken down by .zip-file contents: P16S-2005-hy+misc.zip (5.7 megabytes expanded) README.P16S comments regarding prelim. data release/documentation P16SDoc.pdf prelim. documentation in Adobe pdf format P16SDoc.ps prelim. documentation in PostScript format P16SDoc.txt prelim. doc. in ascii/plain text - no figures p16s.sum WHP90-1/rev.2 (WOCE) format station-cast description file p16s.hyd WHP90-1/rev.2 (WOCE) format bottle data p16s_hy1.csv WHP-Exchange format bottle data p16s-tm_hy1.csv WHP-Exchange format Trace Metal bottle data (sss = station number cc = cast number) P16S-2005_ctd.zip (16.5 megabytes expanded) p16s_ssscc.ctd WHP90-1/rev.2 (WOCE) format CTD data (stations 1-111) 115 casts (2 each for stas 9,31,61,93) P16S-2005_ct1.zip (15.7 megabytes expanded) p16s_ssscc_ct1.csv WHP-Exchange format CTD data (stations 1-111) 115 casts (2 each for stas 9,31,61,93) P16S-2005-TM_ct1.zip (1.1 megabytes expanded) p16s-tm_ssscc_ct1.csv WHP-Exchange format Trace Metal CTD data 45 casts (stations 1-111) Note that there is no Trace Metal CTD data for station 00102: the data were lost after the cast. Non-standard parameter numbers used in .sum file (samples taken but measurements not reported yet) are listed below: 101 Carbohydrates 102 CDOM (Chromophoric Dissolved Organic Material) 104 Chlorophyll 106 Represents two measurements (taken on same station/bottle): Particulate Absorption Spectra and Microsporin Like Amino Acids High-Pressure Liquid Chromatography Phytoplankton Pigments 107 Bacteria Growth Rate 111 N-15 All other parameter numbers are taken directly from Appendix G from the WHPO 90-1/rev.2 manual (see http://whpo.ucsd.edu/manuals.htm). Bottle and CTD data and quality codes, plus calibration and processing comments and figures in the documentation, were last updated at the end of the cruise, before the ship reached port. All these data and documentation, including possible future updates to ODF data, are also available at the ODF cruise website: http://sts.ucsd.edu/cruises/p16s/hydro Logging in may be required in order to access the ODF data; updates to cruise data should be made directly to the CLIVAR/WHPO office. The ".pdf" documentation file can be printed out using Adobe Acrobat Reader, freely available at the following website: http://www.adobe.com/products/acrobat/readstep.html The ".txt" version of the documentation is available for those who cannot use the ps/pdf versions. Note that figures in the documentation can only be printed with the ps/pdf versions and do not appear in the ascii version. Also, the ascii files are intended to be printed out at 80 lines per page with a 90-character page width - typically elite print. The right margin of the ascii version is staggered and lines do not begin with any white space at the request of PIs who wish to merge parts of the ascii file into other cruise documentation. QUESTIONS: Chief Scientist: Dr. Bernadette Sloyan Woods Hole Oceanographic Institution Woods Hole, MA 02543 Mailstop: 21 phone: (508) 289-2404 email: firstname.lastname@example.org Co-Chief Scientist: Dr. James H. Swift SIO/PORD, Mail Code 0214 UC San Diego 9500 Gilman Drive La Jolla, CA 92093-0214 phone: (858) 534-3387 email: email@example.com Questions regarding ODF data should be directed to: Bottle: Kristin M. Sanborn STS/ODF, Mail Code 0214 SIO/UC San Diego 9500 Gilman Drive La Jolla, CA 92093-0214 phone: (858) 534-1903 email: firstname.lastname@example.org CTD: Mary Carol Johnson (same address) phone: (858) 534-1906 email: email@example.com